AAstretch launched 26/10/2010 at 11:27:18
alpha	0.05
data_source	schizosaccharomyces_pombe.prot.txt
explore	0
flank_length	30
flank_start	0
ignore	(predicted|hypothetical|potential|ann\|---)
isoform_check	on
patt_extrem_len	2
patt_gap_max_number	100
patt_gap_min_size	0
patt_stretch_max_size	1000
patt_stretch_min_size	5
residue	Q
rich_gap_tolerance	auto
rich_stretch_min_aa_perc	20
rich_stretch_min_size	30
rich_verbose	0
rich_win_length	5
scan	1
scanmode	seed
seed_gap_max_size	5
seed_seed_max_size	1000
seed_seed_min_size	5
seed_stretch_min_aa_perc	75
sync	1
tuple	1
verbose	0
Global_stat_tup_1	37810	26181	12770	68964	13068	21293	36278	89023	104245	48431	30203	77475	37296	19149	10514	48148	14506	38301	32533	29109	82042	93772	56118	20868	16849	15347	58994	62553	56429	48198	41185	80382	30286	18662	10910	50376	63631	25586	26651	12112	19046	13706	7068	35095	21798	35595	43337	28517	19504	71945	33919	24688	15611	54297	29529	24248	19768	67706	26174	27487	52410	2922	1042	993
Available sequences	4958
Total COD count	2342653
Total stretches found	19
1st-M	4956
Name	Len	Stretches_tot	Stretch_seq	Stretch_len	pure_cod	pure_cod_len	pure_homo	start	stop	Position%	lf_seq	rf_seq	go_func	go_proc	go_comp	omim
>prot|EG:SPAPYUK71.03c-1|cod|SPAPYUK71.03c-1|gene|SPAPYUK71.03c|ann|Uncharacterized protein PYUK71.03c [Source:GeneDB_Spombe;Acc:SPAPYUK71.03c]	3678	1	CAACAGCAACAACAG	15	CAA	2	40	3382	3396	92	ACCTGTAATTTTGTTGCTAATGTTTTTGATTGGGATTTTGGTAACAAGGACGATCATTTGGGCTCTTGTGTAATCGACTGCAAGCTTCTT	ACTAACTATGAAATTCCTTTGGATAGCAAACAAGGAGTTCTTTATCTTCGTATAACTCTGAGCCCAAAATGGGTCCTTCGTTCCAAACGC	GO:0005783:endoplasmic reticulum;GO:0016020:membrane;GO:0016021:integral to membrane;	---	---	---
>prot|EG:SPAC3G9.14-1|cod|SPAC3G9.14-1|gene|SPAC3G9.14|ann|Protein sak1 [Source:GeneDB_Spombe;Acc:SPAC3G9.14]	2301	1	CAATCACAACAACAACAACAA	21	CAA	5	71.4285714285714	2176	2196	94	AAAGCTGGAATATCTCAGAGTAATATCCCTCCTCATTTACAGGAGCACCGTCAATCCCAGCAACACTTCCAACAAGACATCGAAGCTTTG	GCCACTAAAAATTCCTTGATGGAAGCTGCCTACCAGAATGCTCAGAAGCAAAAGGAAGACGACTATATATCCATTGTATTTGATACAAAT	GO:0000790:nuclear chromatin;GO:0005634:nucleus;	GO:0006355:regulation of transcription, DNA-dependent;GO:0007346:regulation of mitotic cell cycle;GO:0031536:positive regulation of exit from mitosis;	GO:0003677:DNA binding;	---
>prot|EG:SPBC27B12.13-1|cod|SPBC27B12.13-1|gene|SPBC27B12.13|ann|Probable mitochondrial import receptor subunit tom40 [Source:GeneDB_Spombe;Acc:SPBC27B12.13]	1035	1	CAGCAACAACAACAGCAG	18	CAA	3	50	997	1014	96	GCCTTTAGCAGTGAATTAGATCACCCTAATCGTAACGCCAAGGTTGGTCTTGGTTTAAGTTTGGAATTACCAGGTAGCGATGAAATGATC	TTGGCTGCGCAGACTGCA	GO:0005739:mitochondrion;GO:0005741:mitochondrial outer membrane;GO:0046930:pore complex;	GO:0006820:anion transport;GO:0006886:intracellular protein transport;GO:0055085:transmembrane transport;	GO:0008308:voltage-gated anion channel activity;GO:0015450:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;	---
>prot|EG:SPAC1805.05-1|cod|SPAC1805.05-1|gene|SPAC1805.05|ann|Casein kinase I homolog 3 [Source:GeneDB_Spombe;Acc:SPAC1805.05]	1320	1	CAAGTTCAACAACAACAGCAA	21	CAA	3	42.8571428571429	1126	1146	85	AGCCCAAGTAAGCAAACTCCAGTCAATAACGTGGTTGATGCCAGTGTTGCGACGCAGAAAGATGGTATACCAGGGAAAGCGGCTTCTCCC	ACTTCTTCCGCTCAACAGCAGCAACCGCAACGGGTGGAGCAACCTGCTCCTCAGACTACCCAGCCTACACAGGTAGACACTCAACAAGCT	GO:0005737:cytoplasm;	GO:0006468:protein amino acid phosphorylation;	GO:0004674:protein serine/threonine kinase activity;GO:0005524:ATP binding;	---
>prot|EG:SPBC19C2.05-1|cod|SPBC19C2.05-1|gene|SPBC19C2.05|ann|Negative regulator of sexual conjugation and meiosis [Source:GeneDB_Spombe;Acc:SPBC19C2.05]	1413	1	CAACAACAACAACAACAGCAACAA	24	CAA	5	62.5	955	978	67	CCCGAACTTTCCACGCTAGTATCAAACTGTAAGAACCTTACACGACGTTTACGACCTGCTCCCCTTGTTTCATCTCGTTATCTCGCATAC	ATGAATTTGCAACAAGGAATTCAAGGTTACCCTCATCAAGGCTATATGCCGACTCAAAACATTGGCTTTCCCTGGCCTCCGACTCCCCAG	GO:0005634:nucleus;GO:0005737:cytoplasm;GO:0005829:cytosol;	GO:0000746:conjugation;GO:0006468:protein amino acid phosphorylation;GO:0007126:meiosis;GO:0031138:negative regulation of conjugation with cellular fusion;GO:0045835:negative regulation of meiosis;	GO:0004674:protein serine/threonine kinase activity;GO:0005515:protein binding;GO:0005524:ATP binding;	---
>prot|EG:SPCC162.07-1|cod|SPCC162.07-1|gene|SPCC162.07|ann|Epsin-1 [Source:GeneDB_Spombe;Acc:SPCC162.07]	2121	1	CAGCAACAACAACAACAA	18	CAA	5	83.3333333333333	1639	1656	77	CCCACTGGATTACAACGGCAAACTACCGGCTATACAGGAAACAATAATCCTTACAGTCGTCCTTTACAGTCACAATCGACTGGAATACTT	TCTGCTCCTCGTTTGGAGCCTACGAAGACTGGCTCAAATAATCCTTTTGCTCAATTTTCAAACTTGCCATCTCAATCTACTGCTCCTGCT	GO:0019898:extrinsic to membrane;GO:0030479:actin cortical patch;	GO:0006897:endocytosis;GO:0007015:actin filament organization;	GO:0005096:GTPase activator activity;GO:0005546:phosphatidylinositol-4,5-bisphosphate binding;	---
>prot|EG:SPBC30B4.04c-1|cod|SPBC30B4.04c-1|gene|SPBC30B4.04c|ann|SWI/SNF chromatin-remodeling complex subunit sol1 [Source:GeneDB_Spombe;Acc:SPBC30B4.04c]	2598	1	CAGCAGCAACAACAACAGCAACAGCAGCAACAACTTTATCAACGACAAATGCAA	54	CAA	3	16.6666666666667	367	420	14	GCATGGAATGGCTCTGGATCTGTGAAATACTCTAGTCCCATGATGCCTTCAAGTCGGATCCCGTTTCAACAAGAAAAAGAGGCTGCAATG	AGCAGAGAGGCCTTACTCTCTCAACAAATTCCTCCTAATCAAATTGGCATCAATGCCCACCCAGCTGTAAGACAAACTCCTCAACCTGCA	GO:0000790:nuclear chromatin;GO:0005634:nucleus;GO:0016514:SWI/SNF complex;	GO:0006350:transcription;GO:0006357:regulation of transcription from RNA polymerase II promoter;GO:0016568:chromatin modification;	GO:0003677:DNA binding;	---
>prot|EG:SPAC4D7.10c-1|cod|SPAC4D7.10c-1|gene|SPAC4D7.10c|ann|Uncharacterized protein C4D7.10c [Source:GeneDB_Spombe;Acc:SPAC4D7.10c]	1422	1	CAACAACTCCAAATGAGACAGCAGCAACAACAGCAGCAA	39	CAA	2	15.3846153846154	1366	1404	96	GAACAAATTACTGAAATTCTGAATCGTCAAGCAATAGCCGCTGGTACTGATTTGGCAACAGTAATGACGGTTGCACGAAATCTTCATTTT	ATGAAGGCTGAAAGG	GO:0005634:nucleus;GO:0005737:cytoplasm;GO:0005829:cytosol;	---	---	---
>prot|EG:SPAC56E4.05-1|cod|SPAC56E4.05-1|gene|SPAC56E4.05|ann|Meiotically up-regulated gene 69 protein [Source:GeneDB_Spombe;Acc:SPAC56E4.05]	579	1	CAGCCTCCTCAACAGCAACAGCAACAGCAACAACAACAACATCAACAA	48	CAA	4	25	451	498	78	TTGGTTCCCATATTCGTGGTTTACAAGGCCGCTCCTTTATTAAAAATGTTATTGCAACAATTAAAGAATTTCAAAAATCAAGCACTAAAT	CATGCGACTCCCTCAGAACCAGTGTTATCAAAGCGCCAACAGAAGTTACGCAAAAAAGCTGCAAAGTACAGTCGCCCA	GO:0005783:endoplasmic reticulum;GO:0016021:integral to membrane;	GO:0007126:meiosis;	---	---
>prot|EG:SPAC343.11c-1|cod|SPAC343.11c-1|gene|SPAC343.11c|ann|Multicopy suppressor of chk1 protein 1 [Source:GeneDB_Spombe;Acc:SPAC343.11c]	4767	1	CAACAACAACAACAACAACAA	21	CAA	7	100	130	150	2	AATATTATTGAATTTCCGTATGTTGACTTTGAGGAATTAAACGTTCATTCCAATATTTTTTCTGAGTTGGAACATGCTAAACCGTCAACA	AATATCAGCAATGAGACCACTTCAACTGGTCCACGGATATGTATCTCTCGTGATGAATTTAAAGCAGTAAATTTGCTCACCAAAGAAGAA	GO:0000118:histone deacetylase complex;GO:0000790:nuclear chromatin;GO:0000812:Swr1 complex;	GO:0006338:chromatin remodeling;GO:0006974:response to DNA damage stimulus;GO:0007126:meiosis;GO:0016568:chromatin modification;GO:0016573:histone acetylation;GO:0043486:histone exchange;	GO:0005515:protein binding;GO:0008270:zinc ion binding;	---
>prot|EG:SPAC16E8.01-1|cod|SPAC16E8.01-1|gene|SPAC16E8.01|ann|Actin cytoskeleton-regulatory complex protein sla1 [Source:GeneDB_Spombe;Acc:SPAC16E8.01]	4263	1	CAACAGCAACAGCAACAA	18	CAA	2	33.3333333333333	3901	3918	91	ATGAATGCACAGACACCGGTGAACTATGGATTTGCTGGAGGTCAAGATACATCTTTCGGTTACGAGCAACAACAAATGTACTCACCTATG	TACTATGGTACAGAAATGCAGCCTGATATGGGTTATCAACAACCGATGATGTCGAACTATTACGATCCCATGCAAATGCAACAACAGACA	GO:0005768:endosome;GO:0005829:cytosol;GO:0005886:plasma membrane;GO:0030479:actin cortical patch;GO:0032153:cell division site;GO:0051286:cell tip;	GO:0006897:endocytosis;	GO:0003779:actin binding;	---
>prot|EG:SPBC146.01-1|cod|SPBC146.01-1|gene|SPBC146.01|ann|Uncharacterized protein C146.01 [Source:GeneDB_Spombe;Acc:SPBC146.01]	3192	3	CAAAACCAGATTCAAAAATTTCGTTCATTGCAGCATATGCAGCAACAACAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAAGCAAGCTCCGCAA	153	CAA	28	54.9019607843137	730	882	22	ATTACAGCTTTGCTTGCAAGGAATGGCAATCCACCAATTCCTATGCAAAAATTACAATCGATGCCACCTGCGAGACTTATTTCAATATAT	AATGCTTTTTTTCCAAACCCTCAAGGTAACGTTGGTGCCCAGTCTCTTCAAAGTATGTCTCCACAAGACCAACCTTCTACTCAGCAACAG	GO:0005634:nucleus;GO:0016592:mediator complex;	GO:0006357:regulation of transcription from RNA polymerase II promoter;GO:0032569:gene-specific transcription from RNA polymerase II promoter;	GO:0016455:RNA polymerase II transcription mediator activity;	---
>prot|EG:SPBC146.01-1|cod|SPBC146.01-1|gene|SPBC146.01|ann|Uncharacterized protein C146.01 [Source:GeneDB_Spombe;Acc:SPBC146.01]	3192	3	CAGCAACAGCAACAACAACAACAGCAG	27	CAA	4	44.4444444444444	1354	1380	42	TCGCAAAATGCCCCTAATACCAATAAACTGGGGAATCCACAACCTGATAATACGGGCAACCCCCAAGCGTTCTCGCAGCAAGCATTTGCT	TTGCACCGTACTTCTAATCCTACAAGTGCTTCTGTTACTTCACAAAATGGCCAACAACCGATCAATACAAAGCTTTCAGCTAATGCCGCC	GO:0005634:nucleus;GO:0016592:mediator complex;	GO:0006357:regulation of transcription from RNA polymerase II promoter;GO:0032569:gene-specific transcription from RNA polymerase II promoter;	GO:0016455:RNA polymerase II transcription mediator activity;	---
>prot|EG:SPBC146.01-1|cod|SPBC146.01-1|gene|SPBC146.01|ann|Uncharacterized protein C146.01 [Source:GeneDB_Spombe;Acc:SPBC146.01]	3192	3	CAACAGCAGCAGCCACAGCCACAGTCACAGCAGCAACAACAG	42	CAG	3	21.4285714285714	2197	2238	68	TTAAGACTTCACCATGAAGTAAATAACAATAATATGAGTATTCAAAATGCTCTTGCCCATATCTCCTCGCTCCGTACTGCATCTATTAAT	GCTTCCCAGTTTCCTCAAGCTCCTTCTGTATCATCCAATGTACGTCCTATCAATGGATCAATTCCTAATGCGCAACCCAGTGTTCCTGGG	GO:0005634:nucleus;GO:0016592:mediator complex;	GO:0006357:regulation of transcription from RNA polymerase II promoter;GO:0032569:gene-specific transcription from RNA polymerase II promoter;	GO:0016455:RNA polymerase II transcription mediator activity;	---
>prot|EG:SPAC1751.01c-1|cod|SPAC1751.01c-1|gene|SPAC1751.01c|ann|Gluconate transport inducer 1 [Source:GeneDB_Spombe;Acc:SPAC1751.01c]	2163	1	CAACAACAGCAGCAA	15	CAA	2	40	1249	1263	57	CTTACTCTTTCTACCTCTCCGATTTCTGGTGTAGAGTCCTCTTCTCTCTCTTCTGCAATATCTAGGAATCAGTCTAATCTTTCATCTTTT	TTTTCGGCTTTGCAGTCAATTTCAAACAATGCCTTAAATGAAAATATTGAGCAGCCTCCGATAAAGATGGCTGCTCGTCATTCCTACCCA	GO:0005634:nucleus;GO:0005829:cytosol;	GO:0006810:transport;GO:0032893:regulation of gluconate transport;GO:0032895:positive regulation of gluconate transport;	---	---
>prot|EG:SPAC25G10.09c-1|cod|SPAC25G10.09c-1|gene|SPAC25G10.09c|ann|Actin cytoskeleton-regulatory complex protein pan1 [Source:GeneDB_Spombe;Acc:SPAC25G10.09c]	5385	1	CAACAGCAGCAGCAA	15	CAG	3	60	268	282	5	CTACCTTTTCAGCAATCACAACCAGCTACTCAGTTTAATAATGGATTCGGATATGCTTCTCAGCCTACGGGGTCTGTAGCCGATTATGGC	ATGTATGGCTATAATGGGATGATGCCTCAAACAATGAACAATACAGGTTTTATGCAACCTCAGCAAACTGGAGCTATACCTGGATTTGCC	GO:0005634:nucleus;GO:0005768:endosome;GO:0005886:plasma membrane;GO:0005938:cell cortex;GO:0030479:actin cortical patch;	GO:0006886:intracellular protein transport;GO:0006897:endocytosis;	GO:0003779:actin binding;GO:0005509:calcium ion binding;	---
>prot|EG:SPBC660.15-1|cod|SPBC660.15-1|gene|SPBC660.15|ann|Uncharacterized RNA-binding protein C660.15 [Source:GeneDB_Spombe;Acc:SPBC660.15]	1425	1	CAACAGCAACAGCAGCAG	18	CAG	3	50	1201	1218	84	CAGTATATGGAAGCGATGCGTAATATGCCTGCTGCTGCTGGCGCAGTACCATATCCTCAACCCGTCATGCCCGCTGGTATGGCTGATTGG	GGAGCGGCATATTTTGATCCTTCTAAAATGAATCAAGGTACTGGTGATGGTGTGCCCTTCAGTCCATCTATGCCTTCCGGCTCGTCTCGT	GO:0005634:nucleus;	---	GO:0000166:nucleotide binding;GO:0003730:mRNA 3'-UTR binding;	---
>prot|EG:SPBC23E6.09-1|cod|SPBC23E6.09-1|gene|SPBC23E6.09|ann|General transcriptional corepressor ssn6 [Source:GeneDB_Spombe;Acc:SPBC23E6.09]	3309	2	CAACAGCAACAACAATCGCAACCCCAACAACAGCCTCAACAGCAACAACATCAACAGCCTCAACAACCGCAG	72	CAA	3	12.5	499	570	15	CAACGAATGATGCCCATACTCTCTTCCAACCAACCCATTCAACAGCTACCCCTTCCCAACCAGGCTTCTCCTTACATTCCCGTTCCCCTG	CCGCCTCAGCAGCCTTTGCAGCAACAACAACAGCAGCGTCAGTTACATTCTGGTATTCAGCAGCCCGTCTCTACAATAGTTTCTCAAAAT	GO:0005634:nucleus;GO:0005737:cytoplasm;	GO:0006350:transcription;GO:0045449:regulation of transcription;	GO:0003714:transcription corepressor activity;	---
>prot|EG:SPBC23E6.09-1|cod|SPBC23E6.09-1|gene|SPBC23E6.09|ann|General transcriptional corepressor ssn6 [Source:GeneDB_Spombe;Acc:SPBC23E6.09]	3309	2	CAGCAACAACAACAGCAGCGTCAG	24	CAA	3	37.5	589	612	17	CAACAGCAACAACAATCGCAACCCCAACAACAGCCTCAACAGCAACAACATCAACAGCCTCAACAACCGCAGCCGCCTCAGCAGCCTTTG	TTACATTCTGGTATTCAGCAGCCCGTCTCTACAATAGTTTCTCAAAATGGTACTTACTATTCGATTCCTGCCGTCAATCATCCAATGGCT	GO:0005634:nucleus;GO:0005737:cytoplasm;	GO:0006350:transcription;GO:0045449:regulation of transcription;	GO:0003714:transcription corepressor activity;	---