AAstretch launched 26/10/2010 at 11:25:0
alpha	0.05
data_source	plasmodium_falciparum.prot.txt
explore	0
flank_length	30
flank_start	0
ignore	(predicted|hypothetical|potential|ann\|---)
isoform_check	on
patt_extrem_len	2
patt_gap_max_number	100
patt_gap_min_size	0
patt_stretch_max_size	1000
patt_stretch_min_size	5
residue	Q
rich_gap_tolerance	auto
rich_stretch_min_aa_perc	20
rich_stretch_min_size	30
rich_verbose	0
rich_win_length	5
scan	1
scanmode	seed
seed_gap_max_size	5
seed_seed_max_size	1000
seed_seed_min_size	5
seed_stretch_min_aa_perc	75
sync	1
tuple	1
verbose	0
Global_stat_tup_1	115072	80964	264505	291555	107669	479338	155290	377579	309865	89520	79997	20109	232520	178467	260507	166536	98798	72158	588629	112783	
Available sequences	5331
Total AA count	4081861
Total stretches found	27
1st-M	5331
Name	Len	Stretches_tot	Stretch_seq	Stretch_len	Q%	pureQ_len	pureQ_ratio	start	stop	Position%	lf_seq	rf_seq	go_func	go_proc	go_comp	omim
>prot|EG:PF10_0143:pep|cod|PF10_0143:mRNA|gene|PF10_0143|ann|transcriptional coactivator ADA2 [Source:GeneDB;Acc:PF10_0143]	2578	1	QQQQQQQLQHQQMQQQQLHQQQIQQQQLHQQQIQQQQLHQQQIQQQQIQQQQLQQQQLQQQQIQQHQLQQQQQQQQQ	77	76.6233766233766	9	0.116883116883117	1320	1396	51	HHQYMLQQCQLTPQQLFMHQQKQQNNMLHH	GNIPPLSARQSKQGILQMQSQNNISHLPPN	---	---	GO:0003677:DNA binding;GO:0008270:zinc ion binding;	---
>prot|EG:PF14_0152:pep|cod|PF14_0152:mRNA|gene|PF14_0152|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF14_0152]	1474	1	QHHHHQQQQQQQQQQQ	16	75	11	0.6875	1254	1269	85	NMNYNKIFDYNNITNMNHHNQHQHHHLHPH	THHHPHTHTHTHTHQMYHDNRKNTSINNDK	---	---	---	---
>prot|EG:PFL2385c:pep|cod|PFL2385c:mRNA|gene|PFL2385c|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PFL2385c]	788	1	QYHDHQGKQQQQQQQQQQQQQQQQQQQ	27	77.7777777777778	19	0.703703703703704	695	721	88	TNDQKNKSYIKDNKEYMYENNKKDEHEDKN	HHNNNNISHTKNNYYNNKQQFLFSTLSKQY	---	---	---	---
>prot|EG:PF13_0076:pep|cod|PF13_0076:mRNA|gene|PF13_0076|ann|Plasmodium exported protein, unknown function [Source:GeneDB;Acc:PF13_0076]	312	1	QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ	33	100	33	1	126	158	40	KQSHVTNSATEVAAQENNSTEEKKNNPPVE	PNELNNFENKLKDLKDCLFDKLDNAVDWEN	---	---	---	---
>prot|EG:PF10_0265:pep|cod|PF10_0265:mRNA|gene|PF10_0265|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF10_0265]	1811	1	QKKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ	70	95.7142857142857	66	0.942857142857143	497	566	27	NEQKSSFLKKHILQETQMTIKKNEKNNNFI	HNNNNIIGNHVNYNMGGVQDVEPYKDTLQK	GO:0016592:mediator complex;	GO:0006357:regulation of transcription from RNA polymerase II promoter;	GO:0016455:RNA polymerase II transcription mediator activity;	---
>prot|EG:PF13_0324:pep|cod|PF13_0324:mRNA|gene|PF13_0324|ann|Sec24 subunit a [Source:GeneDB;Acc:PF13_0324]	940	1	QHQQQQQQQQQQ	12	91.6666666666667	10	0.833333333333333	61	72	6	PFLHNNDIGNNNNMKTNEGPYNAPTYYNPG	GPPLHQGYQHSGVYGMNQGNYKTNNIGENM	GO:0030127:COPII vesicle coat;	GO:0006810:transport;GO:0006886:intracellular protein transport;GO:0006888:ER to Golgi vesicle-mediated transport;GO:0015031:protein transport;	GO:0005515:protein binding;GO:0008270:zinc ion binding;	---
>prot|EG:PF11_0109:pep|cod|PF11_0109:mRNA|gene|PF11_0109|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF11_0109]	221	1	QQQQQQQQ	8	100	8	1	137	144	61	KIVKNNQNIKYSLFVKKDTCIISSACTSLE	AEDEKINKTQDVKIKNKHINKNENNINNIK	GO:0005622:intracellular;	---	GO:0003676:nucleic acid binding;	---
>prot|EG:PF14_0479:pep|cod|PF14_0479:mRNA|gene|PF14_0479|ann|zinc finger protein, putative [Source:GeneDB;Acc:PF14_0479]	1844	1	QQQQQQ	6	100	6	1	1261	1266	68	NKNEKSKKVMLGGNFKKLENTTFLLEAIKE	EEQEEQKKKKEECEYSELEDINQLIKKCLK	GO:0005622:intracellular;	---	GO:0005515:protein binding;GO:0008270:zinc ion binding;	---
>prot|EG:PF14_0529:pep|cod|PF14_0529:mRNA|gene|PF14_0529|ann|gamma-adaptin, putative [Source:GeneDB;Acc:PF14_0529]	1081	1	QQQQQQQQQQQQ	12	100	12	1	772	783	71	FHEFMNPQWDQIRDSILLRIPCNKKMNRKK	NDDEEEPIYSDKNTDTLINKMGSIHTNNHN	GO:0030117:membrane coat;GO:0030131:clathrin adaptor complex;GO:0044431:Golgi apparatus part;	GO:0006886:intracellular protein transport;GO:0016192:vesicle-mediated transport;	GO:0005488:binding;GO:0005515:protein binding;	---
>prot|EG:PFL0115w:pep|cod|PFL0115w:mRNA|gene|PFL0115w|ann|dynein heavy chain, putative [Source:GeneDB;Acc:PFL0115w]	5729	1	QQQQQQQ	7	100	7	1	4764	4770	83	LNSINKKDTLFFLFIFYTSLIFEQQKLNST	NNNVKSIKIEKYTYYSLFIKINNLYNININ	GO:0020011:apicoplast;GO:0030286:dynein complex;	GO:0007018:microtubule-based movement;	GO:0003777:microtubule motor activity;	---
>prot|EG:MAL7P1.22:pep|cod|MAL7P1.22:mRNA|gene|MAL7P1.22|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:MAL7P1.22]	1601	1	QQQQQ	5	100	5	1	302	306	18	DIYSNDNNNNNNNNNKINNDDDDIIYDNNS	TNVGYVEENLFSVPYFLLQKNYDTRNKQLQ	---	---	---	---
>prot|EG:PFA0630c:pep|cod|PFA0630c:mRNA|gene|PFA0630c|ann|Plasmodium exported protein, unknown function [Source:GeneDB;Acc:PFA0630c]	592	1	QQQQQQ	6	100	6	1	237	242	40	KNFTQYLHYFNSNFRENQNINTTPTNEFSE	HHNDLKNKNKNNSEGHNYTHTNLPNNNNNN	---	---	---	---
>prot|EG:PF11_0241:pep|cod|PF11_0241:mRNA|gene|PF11_0241|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF11_0241]	2467	1	QQQQQQRRQ	9	77.7777777777778	6	0.666666666666667	1855	1863	75	QFLISCESNEYQTEIIKTKGDDKENEEGKK	DYPYDDQYKYTNQIEYYNGEYKGQEANAFI	---	---	GO:0003677:DNA binding;	---
>prot|EG:PFC1065w:pep|cod|PFC1065w:mRNA|gene|PFC1065w|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PFC1065w]	949	1	QQQQQQHQQQQQQQQQQTLIQTQ	23	78.2608695652174	10	0.434782608695652	881	903	92	NIPKNFNNNNNNNNNSKFINYNSQQYYPSH	INSTHLNDFNKKKFNKKERYPMKYPEFDGT	---	---	---	---
>prot|EG:PFL1480w:pep|cod|PFL1480w:mRNA|gene|PFL1480w|ann|protein transport protein Sec13, putative [Source:GeneDB;Acc:PFL1480w]	822	1	QQQQQ	5	100	5	1	438	442	53	NNLSHQGPYQNKDTFHRSSQGNFAAYNNST	YSNVNSTGSQMNNVQAGNTVSNNVISNFAN	---	---	---	---
>prot|EG:PF10_0232:pep|cod|PF10_0232:mRNA|gene|PF10_0232|ann|chromodomain-helicase-DNA-binding protein 1 homolog, putative [Source:GeneDB;Acc:PF10_0232]	3328	1	QQQQQQQQQ	9	100	9	1	790	798	23	NNENLYGMMYNNMDDKNNMKYSRKGSLGAK	ALSTSKGKKSASQKKKKSKNATATINGLQG	GO:0000785:chromatin;GO:0005634:nucleus;	GO:0006333:chromatin assembly or disassembly;	GO:0003676:nucleic acid binding;GO:0003677:DNA binding;GO:0003682:chromatin binding;GO:0004386:helicase activity;GO:0005524:ATP binding;	---
>prot|EG:PFB0355c:pep|cod|PFB0355c:mRNA|gene|PFB0355c|ann|serine repeat antigen 2 [Source:GeneDB;Acc:PFB0355c]	1105	1	QPQQQQQQ	8	87.5	6	0.75	64	71	5	LSSDGSRVTTQARIEKPKQQPTLPTLAQET	KEVGSGIGAEQKVESARPGAEVSQSDVERA	---	GO:0006508:proteolysis;	GO:0004197:cysteine-type endopeptidase activity;GO:0008234:cysteine-type peptidase activity;	---
>prot|EG:PFE1335c:pep|cod|PFE1335c:mRNA|gene|PFE1335c|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PFE1335c]	368	1	QEQQQQQQEQ	10	80	6	0.6	17	26	4	MSKEKEDKHKEEEKEEQEQQQQQQEQHDKL	HDKLEGHTYEEELDKVKKYGLDNGKEYEYC	---	---	---	---
>prot|EG:PFI0005w:pep|cod|PFI0005w:mRNA|gene|PFI0005w|ann|erythrocyte membrane protein 1, PfEMP1 [Source:GeneDB;Acc:PFI0005w]	2270	1	QSSQLQQQQQQQQEQQQQQQQ	21	80.9523809523809	8	0.380952380952381	985	1005	43	PRRRKLYIGKIKEWAGIQLKSQVEGGGTGK	LKPQSPVASNSTLTTSAKQSPSNPRADDLR	GO:0016021:integral to membrane;GO:0020002:host cell plasma membrane;GO:0020030:infected host cell surface knob;	GO:0009405:pathogenesis;GO:0016337:cell-cell adhesion;	GO:0004872:receptor activity;GO:0050839:cell adhesion molecule binding;	---
>prot|EG:PFI0925w:pep|cod|PFI0925w:mRNA|gene|PFI0925w|ann|gamma-glutamylcysteine synthetase [Source:GeneDB;Acc:PFI0925w]	1063	1	QQQQQQQYQ	9	88.8888888888889	7	0.777777777777778	266	274	25	KSTNFVNSDTVFAKNDEEGEVEEEDENENE	SNLQQQNVQPKQRQQMIQYVYDDEIENKNK	---	GO:0006750:glutathione biosynthetic process;	GO:0004357:glutamate-cysteine ligase activity;GO:0016874:ligase activity;	---
>prot|EG:PF14_0675:pep|cod|PF14_0675:mRNA|gene|PF14_0675|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF14_0675]	1095	1	QQQQQQQ	7	100	7	1	680	686	62	KDKDSYIVPSKYKEEQHMLHDEIKQKETKK	KKKKIYINSSSTNEDINIVNNIDTKNQEDG	---	---	---	---
>prot|EG:PF14_0184:pep|cod|PF14_0184:mRNA|gene|PF14_0184|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF14_0184]	1166	1	QIQQQQQ	7	85.7142857142857	5	0.714285714285714	530	536	45	SKITEKVGTTSKILSNNFVLSNQITTIKNT	LLLKIQQIKEEEEEEKEKEKKEEEEEEEKK	---	---	---	---
>prot|EG:PF14_0359:pep|cod|PF14_0359:mRNA|gene|PF14_0359|ann|HSP40, subfamily A, putative [Source:GeneDB;Acc:PF14_0359]	424	1	QQQQQQQ	7	100	7	1	396	402	93	EKKYDLENSELEVVSCSPVDKEYIKVRVTK	EAYDDEDHQPEMEGGRVACAQQ	---	GO:0006457:protein folding;	GO:0031072:heat shock protein binding;GO:0046872:metal ion binding;GO:0051082:unfolded protein binding;	---
>prot|EG:PF10_0211:pep|cod|PF10_0211:mRNA|gene|PF10_0211|ann|conserved Plasmodium membrane protein, unknown function [Source:GeneDB;Acc:PF10_0211]	6934	1	QQQQQ	5	100	5	1	5679	5683	81	KNEQGQGVQNGFNTDNYEKVHMREINMMKE	KKKKKEEEEEEEEEEEEEEEKKKKNKENVL	---	---	---	---
>prot|EG:PFL2665c:pep|cod|PFL2665c:mRNA|gene|PFL2665c|ann|erythrocyte membrane protein 1, PfEMP1 [Source:GeneDB;Acc:PFL2665c]	2268	1	QQQQEQQQEQQQEQQQQQQQQQQQQ	25	88	12	0.48	1011	1035	44	DGKANAEGGGQKGARGPNGGTEGANSGKGA	PHSTDSSSSPPSSNPRDVDLRNAFVESAAI	GO:0016021:integral to membrane;GO:0020002:host cell plasma membrane;GO:0020030:infected host cell surface knob;	GO:0009405:pathogenesis;GO:0020013:rosetting;GO:0020033:antigenic variation;GO:0020035:cytoadherence to microvasculature, mediated by symbiont protein;	GO:0004872:receptor activity;GO:0046789:host cell surface receptor binding;GO:0050839:cell adhesion molecule binding;	---
>prot|EG:PF08_0078:pep|cod|PF08_0078:mRNA|gene|PF08_0078|ann|ABC transporter, putative [Source:GeneDB;Acc:PF08_0078]	1419	1	QKQQQQQQKQQQQQKQQQQKQTEQ	24	75	6	0.25	877	900	61	REDEINEKVDYESYSSDTNENVEEKEKNEK	NVPEQNVPEQKEQVDNNYDDDEDIKKFVYN	GO:0020011:apicoplast;	---	GO:0000166:nucleotide binding;GO:0005524:ATP binding;GO:0016887:ATPase activity;GO:0017111:nucleoside-triphosphatase activity;	---
>prot|EG:PF08_0141:pep|cod|PF08_0141:mRNA|gene|PF08_0141|ann|erythrocyte membrane protein 1, PfEMP1 [Source:GeneDB;Acc:PF08_0141]	2858	1	QQQQQQ	6	100	6	1	1601	1606	56	QIFHNGSTTEKCDYTCMEYASRQPQTSACS	NKSSTQNHFPEAFDYPPKEIGDRCTCPKLP	GO:0016021:integral to membrane;GO:0020002:host cell plasma membrane;GO:0020030:infected host cell surface knob;	GO:0009405:pathogenesis;GO:0020013:rosetting;GO:0020033:antigenic variation;GO:0020035:cytoadherence to microvasculature, mediated by symbiont protein;	GO:0004872:receptor activity;GO:0050839:cell adhesion molecule binding;	---