AAstretch launched 26/10/2010 at 11:25:0
alpha	0.05
data_source	plasmodium_falciparum.prot.txt
explore	0
flank_length	30
flank_start	0
ignore	(predicted|hypothetical|potential|ann\|---)
isoform_check	on
patt_extrem_len	2
patt_gap_max_number	100
patt_gap_min_size	0
patt_stretch_max_size	1000
patt_stretch_min_size	5
residue	Q
rich_gap_tolerance	auto
rich_stretch_min_aa_perc	20
rich_stretch_min_size	30
rich_verbose	0
rich_win_length	5
scan	1
scanmode	seed
seed_gap_max_size	5
seed_seed_max_size	1000
seed_seed_min_size	5
seed_stretch_min_aa_perc	75
sync	1
tuple	1
verbose	0
Global_stat_tup_1	33990	8564	4353	33090	9387	62771	35830	228675	249327	42228	29243	149224	50587	5436	11296	47753	14203	84595	204782	25702	147095	391100	88238	24691	7382	6091	35692	192928	43081	89520	82058	506571	36838	8427	3851	31848	97698	15085	65118	17790	9800	1714	1132	12115	16014	83518	67690	21031	12327	59927	88535	19612	15347	43042	63855	9929	19529	61977	20109	25356	207164	3698	528	1104
Available sequences	5331
Total COD count	4087191
Total stretches found	27
1st-M	5331
Name	Len	Stretches_tot	Stretch_seq	Stretch_len	pure_cod	pure_cod_len	pure_homo	start	stop	Position%	lf_seq	rf_seq	go_func	go_proc	go_comp	omim
>prot|EG:PF10_0143:pep|cod|PF10_0143:mRNA|gene|PF10_0143|ann|transcriptional coactivator ADA2 [Source:GeneDB;Acc:PF10_0143]	7737	1	CAACAACAGCAACAGCAACAATTACAACACCAACAAATGCAACAACAACAATTACATCAACAACAGATACAACAACAACAATTACATCAGCAACAAATACAACAGCAACAATTACATCAGCAACAAATACAACAACAACAAATTCAACAACAACAATTACAACAACAACAATTACAACAACAACAGATACAACAACACCAATTACAACAACAGCAACAGCAACAACAACAA	231	CAA	4	5.19480519480519	3958	4188	51	CATCATCAGTACATGCTTCAACAATGTCAGTTAACACCTCAACAATTATTTATGCATCAACAAAAACAACAAAATAATATGTTGCATCAT	GGAAATATACCTCCATTGTCAGCGCGTCAATCGAAACAAGGAATATTACAAATGCAATCACAAAATAATATTTCTCATTTACCTCCAAAC	---	---	GO:0003677:DNA binding;GO:0008270:zinc ion binding;	---
>prot|EG:PF14_0152:pep|cod|PF14_0152:mRNA|gene|PF14_0152|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF14_0152]	4425	1	CAACATCATCATCATCAACAACAACAACAACAACAACAACAACAACAA	48	CAA	11	68.75	3760	3807	85	AATATGAATTATAATAAAATATTTGATTATAATAACATAACAAATATGAACCATCACAATCAACATCAACATCATCATCTTCACCCACAC	ACACATCATCATCCTCACACACATACTCACACACATACGCATCAAATGTATCATGATAATAGAAAGAATACTTCCATAAATAATGACAAA	---	---	---	---
>prot|EG:PFL2385c:pep|cod|PFL2385c:mRNA|gene|PFL2385c|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PFL2385c]	2367	1	CAATATCATGACCACCAAGGCAAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA	81	CAA	19	70.3703703703704	2083	2163	88	ACAAATGATCAAAAAAATAAATCATATATAAAGGATAATAAAGAATATATGTATGAAAATAATAAGAAGGATGAACACGAAGATAAAAAC	CATCATAATAATAATAATATAAGTCATACAAAAAATAATTATTACAATAATAAACAGCAGTTCTTATTTTCTACTTTATCAAAACAATAT	---	---	---	---
>prot|EG:PF13_0076:pep|cod|PF13_0076:mRNA|gene|PF13_0076|ann|Plasmodium exported protein, unknown function [Source:GeneDB;Acc:PF13_0076]	939	1	CAGCAACAACAACAACAACAGCAACAACAACAACAACAGCAACAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA	99	CAA	16	48.4848484848485	376	474	40	AAGCAATCTCATGTTACTAATTCAGCAACCGAAGTAGCTGCACAAGAAAATAATAGTACAGAGGAAAAAAAAAACAACCCCCCCGTAGAA	CCAAATGAATTAAATAATTTTGAAAATAAATTAAAAGATTTAAAAGATTGTTTATTCGATAAACTTGATAATGCCGTTGATTGGGAAAAT	---	---	---	---
>prot|EG:PF10_0265:pep|cod|PF10_0265:mRNA|gene|PF10_0265|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF10_0265]	5436	1	CAAAAAAAAAAACAACAACAGCAACAACAACAGCAGCAACAACAGCAACAACAACAGCAGCAACAACAGCAACAACAACAGCAGCAACAACAACAACAACAACAACAACAGCAACAACAACAACAACAGCAACAACAACAACAACAACAGCAACAACAACAACAGCAACAACAACAACAACAGCAACAACAACAACAACAGCAACAACAA	210	CAA	8	11.4285714285714	1489	1698	27	AATGAACAAAAATCATCTTTTCTAAAAAAACATATTCTTCAAGAAACACAAATGACTATAAAAAAAAATGAAAAAAATAATAATTTTATA	CATAATAATAATAATATTATTGGGAATCATGTAAATTATAATATGGGAGGTGTACAAGACGTGGAACCTTATAAAGATACATTACAAAAA	GO:0016592:mediator complex;	GO:0006357:regulation of transcription from RNA polymerase II promoter;	GO:0016455:RNA polymerase II transcription mediator activity;	---
>prot|EG:PF13_0324:pep|cod|PF13_0324:mRNA|gene|PF13_0324|ann|Sec24 subunit a [Source:GeneDB;Acc:PF13_0324]	2823	1	CAGCATCAACAACAACAACAACAGCAGCAACAGCAA	36	CAA	5	41.6666666666667	181	216	6	CCGTTTCTTCATAACAACGATATAGGAAATAATAATAATATGAAGACAAATGAAGGTCCATATAATGCACCAACATATTATAACCCTGGT	GGCCCCCCTCTTCATCAAGGTTATCAACATTCTGGTGTATATGGTATGAATCAGGGTAATTATAAGACAAATAATATAGGTGAGAATATG	GO:0030127:COPII vesicle coat;	GO:0006810:transport;GO:0006886:intracellular protein transport;GO:0006888:ER to Golgi vesicle-mediated transport;GO:0015031:protein transport;	GO:0005515:protein binding;GO:0008270:zinc ion binding;	---
>prot|EG:PF11_0109:pep|cod|PF11_0109:mRNA|gene|PF11_0109|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF11_0109]	666	1	CAACAACAACAACAACAACAACAA	24	CAA	8	100	409	432	61	AAAATTGTGAAAAATAATCAAAATATAAAGTATTCATTATTTGTTAAAAAAGATACTTGTATAATAAGTTCGGCTTGCACTAGCCTAGAA	GCAGAAGACGAAAAAATAAACAAAACACAAGATGTCAAAATTAAGAATAAACATATTAATAAGAATGAAAATAATATAAATAATATTAAA	GO:0005622:intracellular;	---	GO:0003676:nucleic acid binding;	---
>prot|EG:PF14_0479:pep|cod|PF14_0479:mRNA|gene|PF14_0479|ann|zinc finger protein, putative [Source:GeneDB;Acc:PF14_0479]	5535	1	CAACAACAACAACAACAA	18	CAA	6	100	3781	3798	68	AATAAAAATGAAAAGAGTAAAAAGGTAATGTTAGGCGGAAATTTTAAAAAATTAGAAAACACGACATTTTTACTAGAAGCCATAAAAGAA	GAAGAACAAGAAGAACAAAAAAAGAAAAAAGAAGAGTGTGAATATTCAGAATTGGAAGATATAAATCAATTAATTAAAAAATGTTTGAAA	GO:0005622:intracellular;	---	GO:0005515:protein binding;GO:0008270:zinc ion binding;	---
>prot|EG:PF14_0529:pep|cod|PF14_0529:mRNA|gene|PF14_0529|ann|gamma-adaptin, putative [Source:GeneDB;Acc:PF14_0529]	3246	1	CAGCAACAACAACAACAACAACAACAACAACAACAA	36	CAA	11	91.6666666666667	2314	2349	71	TTCCATGAATTTATGAACCCACAATGGGATCAAATCAGAGATTCTATTTTATTACGTATACCATGTAATAAAAAAATGAATAGAAAAAAA	AATGATGATGAAGAGGAACCAATATATAGTGATAAAAATACTGATACTTTGATAAATAAGATGGGTTCTATACATACAAATAACCATAAT	GO:0030117:membrane coat;GO:0030131:clathrin adaptor complex;GO:0044431:Golgi apparatus part;	GO:0006886:intracellular protein transport;GO:0016192:vesicle-mediated transport;	GO:0005488:binding;GO:0005515:protein binding;	---
>prot|EG:PFL0115w:pep|cod|PFL0115w:mRNA|gene|PFL0115w|ann|dynein heavy chain, putative [Source:GeneDB;Acc:PFL0115w]	17190	1	CAACAACAACAACAACAACAA	21	CAA	7	100	14290	14310	83	TTAAATTCAATAAACAAAAAAGACACACTATTCTTTTTATTTATCTTTTATACATCATTAATATTTGAACAACAAAAATTAAATTCTACA	AATAATAATGTCAAATCTATTAAAATAGAAAAATATACATATTATTCTTTATTCATAAAAATCAACAATTTATACAATATAAATATAAAT	GO:0020011:apicoplast;GO:0030286:dynein complex;	GO:0007018:microtubule-based movement;	GO:0003777:microtubule motor activity;	---
>prot|EG:MAL7P1.22:pep|cod|MAL7P1.22:mRNA|gene|MAL7P1.22|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:MAL7P1.22]	4806	1	CAACAACAACAACAA	15	CAA	5	100	904	918	18	GATATATATAGTAATGACAACAATAATAATAATAATAATAATAATAAAATTAATAATGATGATGATGATATAATATATGATAACAATTCT	ACTAATGTAGGGTATGTAGAAGAAAATTTATTTTCTGTACCTTATTTTTTATTACAAAAAAATTACGACACAAGGAATAAACAACTTCAA	---	---	---	---
>prot|EG:PFA0630c:pep|cod|PFA0630c:mRNA|gene|PFA0630c|ann|Plasmodium exported protein, unknown function [Source:GeneDB;Acc:PFA0630c]	1779	1	CAACAACAACAACAACAA	18	CAA	6	100	709	726	40	AAAAATTTTACACAATATTTACATTACTTCAATAGTAATTTTAGAGAAAATCAAAATATAAATACAACACCAACAAATGAGTTTTCTGAA	CATCATAATGATTTAAAAAATAAAAATAAAAACAATTCCGAAGGACATAATTATACACATACAAACTTACCAAACAATAATAATAATAAT	---	---	---	---
>prot|EG:PF11_0241:pep|cod|PF11_0241:mRNA|gene|PF11_0241|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF11_0241]	7404	1	CAACAACAACAACAACAAAGACGACAA	27	CAA	6	66.6666666666667	5563	5589	75	CAATTTTTAATTAGTTGTGAATCAAATGAATATCAAACTGAAATAATTAAAACGAAAGGTGACGACAAAGAAAATGAAGAAGGAAAGAAA	GATTATCCATATGATGATCAATATAAATATACTAATCAAATTGAATATTATAATGGAGAATACAAAGGACAAGAAGCAAATGCTTTCATT	---	---	GO:0003677:DNA binding;	---
>prot|EG:PFC1065w:pep|cod|PFC1065w:mRNA|gene|PFC1065w|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PFC1065w]	2850	1	CAACAGCAACAACAACAACATCAACAACAACAACAACAACAACAACAACAAACACTAATTCAAACACAA	69	CAA	10	43.4782608695652	2641	2709	92	AATATCCCTAAAAATTTTAATAATAATAATAATAATAATAATAATAGCAAATTTATAAATTATAACTCACAACAATATTATCCATCACAT	ATAAATAGTACTCATTTGAATGATTTTAATAAAAAAAAATTTAATAAAAAGGAAAGGTATCCAATGAAATATCCTGAATTTGATGGAACT	---	---	---	---
>prot|EG:PFL1480w:pep|cod|PFL1480w:mRNA|gene|PFL1480w|ann|protein transport protein Sec13, putative [Source:GeneDB;Acc:PFL1480w]	2469	1	CAACAACAACAACAA	15	CAA	5	100	1312	1326	53	AATAATTTATCTCATCAAGGACCATATCAAAATAAAGATACATTTCATAGATCTTCACAAGGTAATTTTGCAGCTTACAATAATTCCACA	TATTCAAATGTTAATTCTACTGGAAGTCAAATGAATAATGTACAGGCAGGTAATACTGTGTCGAATAATGTAATAAGTAATTTTGCAAAT	---	---	---	---
>prot|EG:PF10_0232:pep|cod|PF10_0232:mRNA|gene|PF10_0232|ann|chromodomain-helicase-DNA-binding protein 1 homolog, putative [Source:GeneDB;Acc:PF10_0232]	9987	1	CAACAACAACAACAACAACAACAACAA	27	CAA	9	100	2368	2394	23	AATAATGAAAATTTATATGGAATGATGTATAATAATATGGATGATAAAAATAATATGAAATATTCAAGAAAAGGTTCGTTAGGAGCTAAA	GCGTTATCAACGAGCAAAGGTAAAAAGTCTGCATCTCAGAAAAAAAAAAAATCAAAAAATGCAACAGCAACAATAAATGGTTTACAAGGT	GO:0000785:chromatin;GO:0005634:nucleus;	GO:0006333:chromatin assembly or disassembly;	GO:0003676:nucleic acid binding;GO:0003677:DNA binding;GO:0003682:chromatin binding;GO:0004386:helicase activity;GO:0005524:ATP binding;	---
>prot|EG:PFB0355c:pep|cod|PFB0355c:mRNA|gene|PFB0355c|ann|serine repeat antigen 2 [Source:GeneDB;Acc:PFB0355c]	3318	1	CAACCCCAACAACAGCAACAACAA	24	CAA	3	37.5	190	213	5	TTATCATCCGATGGTTCACGTGTAACAACACAAGCAAGAATTGAAAAACCAAAACAACAACCAACATTACCAACTTTAGCTCAAGAAACA	AAAGAAGTAGGAAGTGGTATAGGAGCAGAACAAAAAGTAGAATCAGCAAGACCAGGTGCAGAAGTATCCCAATCAGATGTCGAAAGAGCA	---	GO:0006508:proteolysis;	GO:0004197:cysteine-type endopeptidase activity;GO:0008234:cysteine-type peptidase activity;	---
>prot|EG:PFE1335c:pep|cod|PFE1335c:mRNA|gene|PFE1335c|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PFE1335c]	1107	1	CAAGAACAACAACAACAACAACAAGAACAA	30	CAA	6	60	49	78	4	GAAGATCCTCCAAGAAGCAGATCATCAAGACGATACGTCTAAATGAGTAAAGAAAAAGAAGATAAACATAAGGAAGAAGAAAAAGAAGAA	CATGACAAACTTGAAGGACACACATATGAAGAAGAACTTGATAAAGTCAAGAAATATGGACTTGATAATGGCAAGGAATATGAATATTGT	---	---	---	---
>prot|EG:PFI0005w:pep|cod|PFI0005w:mRNA|gene|PFI0005w|ann|erythrocyte membrane protein 1, PfEMP1 [Source:GeneDB;Acc:PFI0005w]	6813	1	CAGTCATCACAACTACAACAACAACAACAACAACAACAAGAACAACAACAACAACAACAACAA	63	CAA	8	38.0952380952381	2953	3015	43	CCCAGGAGGCGAAAACTATATATAGGTAAAATAAAAGAGTGGGCAGGAATACAGTTGAAATCACAGGTAGAAGGTGGTGGTACTGGCAAA	CTAAAACCACAATCACCAGTAGCTAGTAATTCCACTTTGACCACTTCGGCCAAGCAGTCGCCGTCCAACCCACGCGCCGACGACTTGCGT	GO:0016021:integral to membrane;GO:0020002:host cell plasma membrane;GO:0020030:infected host cell surface knob;	GO:0009405:pathogenesis;GO:0016337:cell-cell adhesion;	GO:0004872:receptor activity;GO:0050839:cell adhesion molecule binding;	---
>prot|EG:PFI0925w:pep|cod|PFI0925w:mRNA|gene|PFI0925w|ann|gamma-glutamylcysteine synthetase [Source:GeneDB;Acc:PFI0925w]	3192	1	CAACAACAACAACAGCAACAATACCAA	27	CAA	4	44.4444444444444	796	822	25	AAATCTACCAATTTTGTTAATTCAGATACAGTATTTGCAAAAAATGACGAAGAAGGAGAAGTAGAAGAAGAAGACGAAAATGAAAACGAA	TCGAATTTACAACAACAAAATGTACAACCAAAACAACGTCAACAAATGATACAATATGTCTATGATGATGAAATAGAAAATAAAAATAAA	---	GO:0006750:glutathione biosynthetic process;	GO:0004357:glutamate-cysteine ligase activity;GO:0016874:ligase activity;	---
>prot|EG:PF14_0675:pep|cod|PF14_0675:mRNA|gene|PF14_0675|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF14_0675]	3288	1	CAACAACAACAACAACAACAA	21	CAA	7	100	2038	2058	62	AAAGACAAAGACTCGTATATAGTACCTTCTAAATATAAAGAAGAACAACATATGTTACATGATGAAATCAAACAAAAGGAAACTAAAAAA	AAAAAAAAAAAAATATATATCAACTCAAGTAGTACAAATGAAGACATAAATATTGTTAACAATATTGACACAAAAAATCAAGAGGATGGA	---	---	---	---
>prot|EG:PF14_0184:pep|cod|PF14_0184:mRNA|gene|PF14_0184|ann|conserved Plasmodium protein, unknown function [Source:GeneDB;Acc:PF14_0184]	3501	1	CAAATACAACAACAACAACAA	21	CAA	5	71.4285714285714	1588	1608	45	TCTAAAATTACAGAAAAAGTAGGAACAACTAGTAAAATATTATCTAATAATTTTGTATTAAGTAATCAAATAACAACAATTAAAAATACA	TTATTACTAAAAATACAACAAATAAAAGAAGAGGAAGAAGAAGAAAAAGAAAAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAAAAAAA	---	---	---	---
>prot|EG:PF14_0359:pep|cod|PF14_0359:mRNA|gene|PF14_0359|ann|HSP40, subfamily A, putative [Source:GeneDB;Acc:PF14_0359]	1275	1	CAACAACAACAACAACAACAA	21	CAA	7	100	1186	1206	93	GAAAAAAAATATGACTTAGAAAATAGTGAACTAGAAGTTGTTTCCTGCTCACCTGTTGATAAAGAATATATTAAAGTTAGAGTTACCAAA	GAAGCATACGACGATGAAGATCATCAACCAGAAATGGAAGGTGGAAGAGTAGCTTGTGCTCAACAA	---	GO:0006457:protein folding;	GO:0031072:heat shock protein binding;GO:0046872:metal ion binding;GO:0051082:unfolded protein binding;	---
>prot|EG:PF10_0211:pep|cod|PF10_0211:mRNA|gene|PF10_0211|ann|conserved Plasmodium membrane protein, unknown function [Source:GeneDB;Acc:PF10_0211]	20805	1	CAACAACAACAACAA	15	CAA	5	100	17035	17049	81	AAAAATGAACAGGGTCAAGGAGTCCAAAATGGATTCAACACGGATAATTATGAAAAGGTGCACATGAGGGAAATAAATATGATGAAAGAA	AAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAAAAAAAAAAACAAGGAAAATGTATTA	---	---	---	---
>prot|EG:PFL2665c:pep|cod|PFL2665c:mRNA|gene|PFL2665c|ann|erythrocyte membrane protein 1, PfEMP1 [Source:GeneDB;Acc:PFL2665c]	6807	1	CAACAACAACAAGAACAACAACAAGAACAACAACAAGAACAACAACAACAACAACAACAACAACAACAACAACAA	75	CAA	12	48	3031	3105	44	GATGGTAAAGCCAATGCGGAAGGTGGTGGCCAAAAGGGTGCCAGAGGTCCTAATGGTGGTACCGAAGGTGCTAATAGTGGGAAAGGCGCA	CCACATAGTACTGATAGTAGTAGCTCGCCGCCGTCGTCCAACCCACGCGACGTCGACTTGCGCAACGCCTTCGTGGAGTCCGCTGCAATA	GO:0016021:integral to membrane;GO:0020002:host cell plasma membrane;GO:0020030:infected host cell surface knob;	GO:0009405:pathogenesis;GO:0020013:rosetting;GO:0020033:antigenic variation;GO:0020035:cytoadherence to microvasculature, mediated by symbiont protein;	GO:0004872:receptor activity;GO:0046789:host cell surface receptor binding;GO:0050839:cell adhesion molecule binding;	---
>prot|EG:PF08_0078:pep|cod|PF08_0078:mRNA|gene|PF08_0078|ann|ABC transporter, putative [Source:GeneDB;Acc:PF08_0078]	4260	1	CAAAAACAACAACAACAACAACAAAAACAACAACAACAACAAAAACAACAACAACAAAAACAAACGGAACAG	72	CAA	6	25	2629	2700	61	AGAGAGGATGAAATAAATGAGAAGGTGGATTATGAGAGTTATTCGAGTGATACGAATGAAAATGTGGAAGAGAAAGAAAAAAACGAAAAA	AACGTACCAGAACAGAACGTACCAGAACAGAAAGAACAAGTAGATAATAATTATGACGATGATGAGGATATAAAAAAATTCGTTTACAAT	GO:0020011:apicoplast;	---	GO:0000166:nucleotide binding;GO:0005524:ATP binding;GO:0016887:ATPase activity;GO:0017111:nucleoside-triphosphatase activity;	---
>prot|EG:PF08_0141:pep|cod|PF08_0141:mRNA|gene|PF08_0141|ann|erythrocyte membrane protein 1, PfEMP1 [Source:GeneDB;Acc:PF08_0141]	8577	1	CAACAACAACAACAACAA	18	CAA	6	100	4801	4818	56	CAAATTTTTCACAATGGAAGTACTACTGAGAAATGTGATTATACGTGTATGGAATATGCGTCAAGACAACCACAAACATCTGCTTGCAGT	AACAAATCATCTACACAAAACCATTTCCCTGAAGCGTTCGATTATCCTCCTAAAGAAATTGGTGATAGGTGCACTTGTCCTAAACTTCCG	GO:0016021:integral to membrane;GO:0020002:host cell plasma membrane;GO:0020030:infected host cell surface knob;	GO:0009405:pathogenesis;GO:0020013:rosetting;GO:0020033:antigenic variation;GO:0020035:cytoadherence to microvasculature, mediated by symbiont protein;	GO:0004872:receptor activity;GO:0050839:cell adhesion molecule binding;	---