AAstretch launched 20/10/2010 at 0:36:14 alpha 0.05 data_source caenorhabditis_elegans.prot.txt explore 0 flank_length 30 flank_start 0 ignore (predicted|hypothetical|potential|ann\|---) isoform_check on patt_extrem_len 2 patt_gap_max_number 100 patt_gap_min_size 0 patt_stretch_max_size 1000 patt_stretch_min_size 5 residue Q rich_gap_tolerance auto rich_stretch_min_aa_perc 20 rich_stretch_min_size 30 rich_verbose 0 rich_win_length 5 scan 1 scanmode seed seed_gap_max_size 5 seed_seed_max_size 1000 seed_seed_min_size 5 seed_stretch_min_aa_perc 75 sync 1 tuple 1 verbose 0 Global_stat_tup_1 181761 112142 75487 200750 80852 100711 154426 328116 371674 221073 213888 209183 283480 60488 40000 98297 81284 126798 86489 168750 293974 337843 231103 71971 131434 109693 189209 88401 180812 237098 163258 274297 235799 40055 89276 80718 242111 126923 137925 34277 109214 44876 42479 99620 75656 110698 188144 95261 111818 151393 184679 92965 81565 172921 89188 120688 131492 217441 99205 124597 160554 10154 3641 7083 Available sequences 20878 Total COD count 9017158 Total stretches found 259 1st-M 20878 Name Len Stretches_tot Stretch_seq Stretch_len pure_cod pure_cod_len pure_homo start stop Position% lf_seq rf_seq go_func go_proc go_comp omim >prot|M04B2.1|cod|M04B2.1|gene|M04B2.1|ann|mep-1 is required for repression by the fem-3 3' UTR in vivo, and for maintenance of somatic (versus germline) differentiation. MEP-1 protein has zinc-finger domains and a glutamine/asparagine-rich domain. [Source: WormBase] 2613 2 CAACAGCAGCAACAA 15 CAG 2 40 1633 1647 62 ATTCGAAACATCATGATGCCGAAGCAAGACGATCATCTCTATATCAACAGATGGCTCTGGGAGAGGCCCCAATTGGATCCCAGCATTCTT GCTGCTCTTCAGCAAGCTCAACAAAAGAAGCAACAGCAACTTCTGCATCAACAGCAAGCAGCACAAGCTGCAGCCGCTGCGCAACTCTTA GO:0016758:transferase activity, transferring hexosyl groups; --- --- --- >prot|M04B2.1|cod|M04B2.1|gene|M04B2.1|ann|mep-1 is required for repression by the fem-3 3' UTR in vivo, and for maintenance of somatic (versus germline) differentiation. MEP-1 protein has zinc-finger domains and a glutamine/asparagine-rich domain. [Source: WormBase] 2613 2 CAACAATTACAACAGCAACAACAACAGCAACAG 33 CAA 3 27.2727272727273 1744 1776 66 CTTCAGCAAGCTCAACAAAAGAAGCAACAGCAACTTCTGCATCAACAGCAAGCAGCACAAGCTGCAGCCGCTGCGCAACTCTTACGGAAG GCTCGTCTTCGTGAGCAACAGCAAGCGGCCCAATTCCGGCAAGTGGCTCAACTGCTGCAACAACAATCAGCGCAGGCTCAACGTGCACAG GO:0016758:transferase activity, transferring hexosyl groups; --- --- --- >prot|Y50D4C.5|cod|Y50D4C.5|gene|Y50D4C.5|ann|Y50D4C.5 [Source:RefSeq_peptide;Acc:NP_503361] 1593 1 CAGCAGCAGCAGCAGCTTCAGGGCCAG 27 CAG 5 55.5555555555556 1180 1206 74 TCTGTGAAACAGGAGGTCTACGAGCAGAGCTCCTCGTCAAACTGTCCGAGCATCTCGTCGACTCCTCGATCGTCGGAGGATCCTGCGAAT AATGTTGTATTCGGGGCTCATCCAGAGCATCTGAATAATCTGTGGATGGTTTCCAAGGAAATTCGCGATCAGCAGCTTCAACTCGAGCGT --- --- --- --- >prot|Y44E3A.6a|cod|Y44E3A.6a|gene|Y44E3A.6|ann|Y44E3A.6a [Source:RefSeq_peptide;Acc:NP_740827] 2526 1 CAGCAACAACAACAA 15 CAA 4 80 2032 2046 80 GAGCATTTTAGGCATGGAATTAATGAGTATCTGGCTACAACGTCTCAAATGATTCAAGGAACCGCAATGGCCACAATGCAAATGGCAGCT AAAGGAGAACTGGAACGAATTGCCCTTCTTCGAATGATTGAAACAAATCCAGAAGAAGCCGTCGAAGCAGCTCTCAACAAGGCCGATATG --- --- --- --- >prot|R10E11.1a|cod|R10E11.1a|gene|R10E11.1|ann|cbp-1 encodes a homolog of the mammalian transcriptional cofactors CBP (OMIM:600140) and p300 (E1A-BINDING PROTEIN, 300-KD. OMIM:602700) that have been shown to possess histone acetyltransferase activity, and which, when mutated, lead to Rubinstein-Taybi syndrome (OMIM:180849) and colorectal cancer (OMIM:114500). at least one splicing form of CBP-1 exhibits histone acetyltransferase (HAT) activity in vitro and has a glutamine/asparagine-rich domain. CBP-1 is required during embryogenesis for differentiation of all non-neuronal somatic cell types. CBP-1 is expressed very early in embryogenesis, suggesting that it may interact with maternally provided transcription factors, such as SKN-1, to specific developmental fates. [Source: WormBase] 6138 1 CAACAACAACAGCAGCAACAACGAGAGCAA 30 CAA 3 30 1087 1116 17 CCAAATGGTCAACCTGGACCACAAGCTGCTGCAGCACAACACGCTGCTCAACAGCAAGCTGCTGCACAAGCTCAAGCTCAGGCGGCTGCA GAAGCTGCGGCGGCAGCTCAACGAAATGGTGCTGGAAGGGCGACAACTCCTGGATCAAGCATGCTTGCAACGCATCAAGATCCCGAGAAG GO:0005515:protein binding;GO:0004879:ligand-dependent nuclear receptor activity;GO:0003700:sequence-specific DNA binding transcription factor activity;GO:0003707:steroid hormone receptor activity;GO:0008270:zinc ion binding;GO:0043565:sequence-specific DNA binding; GO:0006355:regulation of transcription, DNA-dependent; GO:0005634:nucleus; --- >prot|C04A2.3c.1|cod|C04A2.3c.1|gene|C04A2.3|ann|egl-27 encodes a homolog of human MTA1, part of an ATP-dependent complex with nucleosome remodelling and histone deacetylation activities that may promote tumor metastasis. in conjunction with its paralog egr-1, egl-27 is required for proper organization in all parts of the embryo, and for the embryonic expression of hlh-8. [Source: WormBase] 1839 3 CAACAGCAACAGCAA 15 CAA 1 20 1156 1170 63 CAACATCAAATGGCTCTTCAACAACAACTTGAAGCTCATCAAGTTCAGCTTATGATGGCTCATCAACATCAACAAAAAATGATAGCTGAA AGACATGCTGCAGCGCAGCAATTGCGAGAACGGGAGCAACGTGAACAACGTGAACGAGAAAGAGAACGACAACATCAACAACAGGCTCAA GO:0004767:sphingomyelin phosphodiesterase activity; --- GO:0005576:extracellular region; --- >prot|C04A2.3c.1|cod|C04A2.3c.1|gene|C04A2.3|ann|egl-27 encodes a homolog of human MTA1, part of an ATP-dependent complex with nucleosome remodelling and histone deacetylation activities that may promote tumor metastasis. in conjunction with its paralog egr-1, egl-27 is required for proper organization in all parts of the embryo, and for the embryonic expression of hlh-8. [Source: WormBase] 1839 3 CAGCAACAACAACAG 15 CAA 3 60 1273 1287 69 GCGCAGCAATTGCGAGAACGGGAGCAACGTGAACAACGTGAACGAGAAAGAGAACGACAACATCAACAACAGGCTCAACAAGCTCTTCAT CATGCGGCTGCTGCAGCGAATCAATTGAATCCAGCAATGATGCAGATGATGGCATTAATGGCGAACAGCGCAGCCAGCCAACAAGATATT GO:0004767:sphingomyelin phosphodiesterase activity; --- GO:0005576:extracellular region; --- >prot|C04A2.3c.1|cod|C04A2.3c.1|gene|C04A2.3|ann|egl-27 encodes a homolog of human MTA1, part of an ATP-dependent complex with nucleosome remodelling and histone deacetylation activities that may promote tumor metastasis. in conjunction with its paralog egr-1, egl-27 is required for proper organization in all parts of the embryo, and for the embryonic expression of hlh-8. [Source: WormBase] 1839 3 CAGCAGCAACAACAGCAACAGCAA 24 CAG 2 25 1402 1425 76 TTGAATCCAGCAATGATGCAGATGATGGCATTAATGGCGAACAGCGCAGCCAGCCAACAAGATATTGCACGATTAATGGAGATGGCTGCT GCTGCTCAGGCTCAAGCCCAGCGTGACCAAGAACGTGAACGACGGGAACGTGAAGCACGAGAACGGGAAGCTGCTCGGGAACGTGAACGA GO:0004767:sphingomyelin phosphodiesterase activity; --- GO:0005576:extracellular region; --- >prot|M01B12.4b|cod|M01B12.4b|gene|M01B12.4|ann|M01B12.4a [Source:RefSeq_peptide;Acc:NP_740823] 1935 1 CAGCAACAGCAGCAGCAGCAG 21 CAG 5 71.4285714285714 1471 1491 76 GCCCCAGTCGGAGCAGGAGAAGGAAGTGGTGTCAACGATCTGATCGGTGTCTTCGGAAACGACTTTATCAATCAAAATCAGCCACCACCG AGACTTGTCCAATTCGACGAGGATACTGACAGTGGAAAAGCGTCTCCAACATCATCAGAGACATCATCAACAACTGATGAAGTTACTCCG GO:0005515:protein binding; --- --- --- >prot|H20J18.1a.1|cod|H20J18.1a.1|gene|H20J18.1|ann|scd-1 encodes a novel protein with several regions that are extremely glutamine (Q) rich, interspersed with other residues (usually alanine). SCD-1 affects signalling by proteins in the DAF-7/transforming growth factor (TGF)-beta pathway (DAF-1, DAF-8, and DAF-14), and the Q-rich regions of SCD-1 protein may mediate epigenetic changes of stably heritable tertiary conformation. [Source: WormBase] 2844 3 CAGCAACAGCAGCAACAGCAAATGCAACAGCAACTCCAGCAACAA 45 CAG 2 13.3333333333333 1345 1389 47 CAGCAATTGCAAGGACCACAAGGGCAAGCTCAAAATCAGATGCAGCAACAATTAATACAGCAACAGTTGAATCAAATTTTGGCCAGAAAT GCTAGCAATAATGCTCTTCAACAACAGCTTCAGCAACTTGTTGAACAGCAACGTCAGCAGCAACAGCAACAGCAACAAAGTGTACAGAAT --- --- --- --- >prot|H20J18.1a.1|cod|H20J18.1a.1|gene|H20J18.1|ann|scd-1 encodes a novel protein with several regions that are extremely glutamine (Q) rich, interspersed with other residues (usually alanine). SCD-1 affects signalling by proteins in the DAF-7/transforming growth factor (TGF)-beta pathway (DAF-1, DAF-8, and DAF-14), and the Q-rich regions of SCD-1 protein may mediate epigenetic changes of stably heritable tertiary conformation. [Source: WormBase] 2844 3 CAACAACAGCTTCAGCAACTTGTTGAACAGCAACGTCAGCAGCAACAGCAACAGCAACAA 60 CAA 2 10 1408 1467 49 CAGTTGAATCAAATTTTGGCCAGAAATCAGCAACAGCAGCAACAGCAAATGCAACAGCAACTCCAGCAACAAGCTAGCAATAATGCTCTT AGTGTACAGAATGCTCAAATTGCAGCTGCCGCTACAGCAGCTGCATCCACAAGTACCCCAAACAGTCAGGACCGCAAAATTCCACACACT --- --- --- --- >prot|H20J18.1a.1|cod|H20J18.1a.1|gene|H20J18.1|ann|scd-1 encodes a novel protein with several regions that are extremely glutamine (Q) rich, interspersed with other residues (usually alanine). SCD-1 affects signalling by proteins in the DAF-7/transforming growth factor (TGF)-beta pathway (DAF-1, DAF-8, and DAF-14), and the Q-rich regions of SCD-1 protein may mediate epigenetic changes of stably heritable tertiary conformation. [Source: WormBase] 2844 3 CAACAACAACAACAA 15 CAA 5 100 1816 1830 63 CTGCAGCATGCTCTTCTTCAACATGCCAATAACTCTACGAATAGTGCCTCTAAAGCCACCCTTCATGACATTCGTTTTCAAGCTATGGCC GTAGCCGCATCTGGAGTCGGACAGGGACAAACGACACTTCATCCCTTCATTCGTCCAAACGATACAACACGACAAGCACAACTCGTCAAT --- --- --- --- >prot|F23H11.1|cod|F23H11.1|gene|F23H11.1|ann|The bra-2 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1), paralogous to bra-1, that may act upon the SMA-6 TGF-beta signalling pathway [Source: WormBase] 645 1 CAGCAACAACAGCAA 15 CAA 2 40 40 54 6 GTACCAGCTCCTCAACAAGTCGGAGCACCAATGCCGCCACAACAACAATAAATGGCCGATGGGCAAGTGCATGATGAATTGATGATGGAT GGAGTGGTTCCTCAACAAGGTGATATTCACCTATCGCCGATCGACAAGGATCTCGGAGATGCGGCGTTAGAAAATAATGTGCGGCAGTAT GO:0003677:DNA binding; GO:0006334:nucleosome assembly; GO:0005634:nucleus; --- >prot|R10E4.2a.3|cod|R10E4.2a.3|gene|R10E4.2|ann|Temporarily Assigned Gene name family member (tag-310) [Source:RefSeq_peptide;Acc:NP_497856] 1074 1 CAACAACAACAGCAACAACAGCAGCCACAACAAGGGCAAGCTCCCCAGCAACAACAACAG 60 CAA 3 15 22 81 2 AATCAACAGTTTTACAACCCGAATAATGGACGCAACAAAAAGTATTTCCAGCCGATGAATCCACAATAAATGAACGCATCTTCGGCTCCA GGACCACCACAACATCAATATCAACAACAACGCCCATTCCATGGACGTGTCCAAAACCATATGAGAGGAAGCGGACCGTTTGGAAACAGC GO:0005230:extracellular ligand-gated ion channel activity; GO:0006811:ion transport; GO:0016021:integral to membrane;GO:0045211:postsynaptic membrane; --- >prot|T05A10.1i|cod|T05A10.1i|gene|T05A10.1|ann|sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain. SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396). SMA-9 proteins are required for growth to normally large body size. [Source: WormBase] 5784 5 CAGCAGCAGCAGGCTTCGCAGCAACAACAGCAAGTGCAGCACGTCCAGCAGCAACAACAGTCGCAGCAGCAACAGCAACAA 81 CAG 4 14.8148148148148 118 198 2 AACAACTTTCAGCAGGTACAACGTGAGCAGCTAAATCATCAACGATTATTACAAGCACAGCTCCAGACTAATGGACCTGGAAGTGTTTCT GTTGCTTCACAACAAAACCAGCCGCAATTGCAAATGAATGCTCAGATACTGCAAGCTTTGTCAACACCACAAGGACAAAATTTAGTTAAC --- --- --- --- >prot|T05A10.1i|cod|T05A10.1i|gene|T05A10.1|ann|sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain. SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396). SMA-9 proteins are required for growth to normally large body size. [Source: WormBase] 5784 5 CAGCAGCAACAGCAATTGCAGCAGCAACAAGCTCAGCAG 39 CAG 2 15.3846153846154 814 852 14 TCACAAGCCCAACAACAAGCTCAACAAGCTCAGCATGTCCAGTCTAGACAAATGCAGCCGTCCCAACAGAGCCAGGTACAGGCGCAACTC CTTTCACAGCAGCAGGCGCAGCAGCAACAACAATTACAACAGTTACAACTGCAGCAATTTCTTCAACAACAGCAACAGCTTCATCAGCAA --- --- --- --- >prot|T05A10.1i|cod|T05A10.1i|gene|T05A10.1|ann|sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain. SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396). SMA-9 proteins are required for growth to normally large body size. [Source: WormBase] 5784 5 CAGCAGCAGGCGCAGCAGCAACAACAATTACAACAGTTACAACTGCAGCAA 51 CAG 3 17.6470588235294 859 909 14 AGACAAATGCAGCCGTCCCAACAGAGCCAGGTACAGGCGCAACTCCAGCAGCAACAGCAATTGCAGCAGCAACAAGCTCAGCAGCTTTCA TTTCTTCAACAACAGCAACAGCTTCATCAGCAACGTGCGGCTGCCCAACAAGCTCAGGCTCAGAACAATGCTTCACAACAACGCCCGTCG --- --- --- --- >prot|T05A10.1i|cod|T05A10.1i|gene|T05A10.1|ann|sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain. SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396). SMA-9 proteins are required for growth to normally large body size. [Source: WormBase] 5784 5 CAACAACAGCAACAGCTTCATCAGCAA 27 CAA 2 22.2222222222222 916 942 15 CAATTGCAGCAGCAACAAGCTCAGCAGCTTTCACAGCAGCAGGCGCAGCAGCAACAACAATTACAACAGTTACAACTGCAGCAATTTCTT CGTGCGGCTGCCCAACAAGCTCAGGCTCAGAACAATGCTTCACAACAACGCCCGTCGGTTGCATCGACGCCTGCATTGTCTTCAACTCCA --- --- --- --- >prot|T05A10.1i|cod|T05A10.1i|gene|T05A10.1|ann|sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain. SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396). SMA-9 proteins are required for growth to normally large body size. [Source: WormBase] 5784 5 CAACAGGCTCAACAGCAACAGCAAGGGCAGTCTCAA 36 CAA 1 8.33333333333333 1147 1182 19 ATGCAAGCCCAGCTTCAACAGCAACTGCTTCTCCAACAGCAACAGGCTCAGGCTCAACAAGCTCAACAAGCTCAGCAAGCACAACTAGCT AATAGAACAGTTTCTCAAGCACTGCAATATATTCAGTCTATGCAACTGCAGCAAAGAGCCGATGGAACCCCAAACGCCCCCTCGCTCTCC --- --- --- --- >prot|W04B5.3a|cod|W04B5.3a|gene|W04B5.3|ann|W04B5.3b [Source:RefSeq_peptide;Acc:NP_741096] 1281 1 CAACAGCAACAGCAACAG 18 CAA 1 16.6666666666667 1030 1047 80 CCTCAGCCACTTCCCCAACAAATGTCACGTCAACAGGCTCCAATCTATCAAAATCAACAGCAAATGCCTCCGGGATACAATCCTTATCTC ATGGCAGCCACCGTCCCAATGCCATATCCCTCAGGAGCAGCAGCAGTTCCAGTGTCTGCAATGGCACCACAAGTAGTACAGTACCCAACT --- GO:0007156:homophilic cell adhesion; GO:0016020:membrane; --- >prot|C34D4.14|cod|C34D4.14|gene|C34D4.14|ann|C34D4.14 [Source:RefSeq_peptide;Acc:NP_501120] 8286 1 CAACAACAACAACAACAA 18 CAA 6 100 5401 5418 65 GAACCAATGGGTGGAGAAGAGAGTGATTCGGCTGCAAGCATGAGATCAGCAGCATCGTCAAATTCACAAATGTCTATGGGATCATCTTCT GATTCAGACATGACTCCAAGGGACTCTGCGGGAACTCCTTCTACTCCTCGTGATGATAAGAACCAAACACTCTCCGTTTCTGCACCTGAT GO:0005524:ATP binding;GO:0004736:pyruvate carboxylase activity;GO:0009374:biotin binding;GO:0016874:ligase activity; GO:0008152:metabolic process;GO:0006094:gluconeogenesis; GO:0005737:cytoplasm; --- >prot|C07A9.3b|cod|C07A9.3b|gene|C07A9.3|ann|tlk-1 encodes, through alternative splicing, two isoforms of a Tousled-class serine/threonine protein kinase. TLK-1A/B are orthologous to Tousled from A. thaliana. tlk-1(RNAi) embryos have, compared to normal embryos, reduced phosphorylation of the RNA polymerase II C-terminal domain at Serine-2 and methylation of histone H3 at Lysine-36 (posttranslational modifications associated with transcriptional elongation), along with a lethal phenotype consistent with general defects in zygotic transcription. TLK-1A/B have a glutamine/asparagine-rich domain and a putative coil domain. [Source: WormBase] 2898 1 CAGCAGCAACAGCAATATCAGCAGCAGCAGGCTCAA 36 CAG 4 33.3333333333333 550 585 19 CAAATGCAACAGCAGCAGCAACATCATCAGCAGCAATACAATATGTCGTATCATAATCATCAACAACAAATGCAGCAGATGCATTACCAC CATCATCAGATGTATGCTCCACAAATTCAGCAACAGCAACAGCAGCCCCAGCAACAGTCACAACAACAGTCTGCCCAACAGCCCCAACAG --- GO:0006470:protein amino acid dephosphorylation; --- --- >prot|F07C6.4b|cod|F07C6.4b|gene|F07C6.4|ann|F07C6.4b [Source:RefSeq_peptide;Acc:NP_502442] 1920 1 CAGCAACAGCAACAACAACATCAGCAGCAA 30 CAA 3 30 1843 1872 96 GCGACAATGGGAGCACAATCACCGGCTCCTCCGCCAAACGGAAAATTGCCGACAAATCCGCAAATGGAGGCACTTTTATCATATTATAAG TCACGGTCAGCGCCATCTCAACAGCCCAAGACGGCGACAATTGTC --- --- --- --- >prot|Y59A8B.1a|cod|Y59A8B.1a|gene|Y59A8B.1|ann|dpy-21 encodes a novel, conserved protein with a proline-rich N terminus. dpy-21 affects RNA levels of X-linked dosage-compensated genes, body length in hermaphrodites, and fertility and male tail development in males. DPY-21 interacts in vivo with DPY-27 and SDC-3, members of the dosage compensation complex, and like members of the dosage compensation complex, is diffusely localized in nuclei of XX embryos containing <40 cells, but then specifically localizes to X chromosomes of XX embryos with >40 cells, remaining on the X throughout development. in XO embryos, DPY-21 is dispersed throughout the nucleus in multiple foci that are not coincident with the X chromosome. in hermaphrodites, localization of DPY-21 to the X chromosome requires activity of SDC-2, SDC-3, DPY-26, DPY-27, and DPY-28. DPY-21 is not, however, required reciprocally for the stability or localization of these other dosage compensation proteins. in addition, unlike SDC-3 and other members of the dosage compensation complex, DPY-21 is not recruited to the autosomal her-1 regulatory region, suggesting that DPY-21 is not part of the gene-specific complex that represses her-1 expression in hermaphrodites. [Source: WormBase] 4926 1 CAGCAGCAACAGCAGCAG 18 CAG 3 50 271 288 5 AGCAGCAGCCATGACAATGATTATAGTGAATACCGCCCACGCCGTGGGCCTAAAACTCCGCCTCTTCCACCGCCGGATGAGCCTGTAAAA CCAATTGTTGCTCCATATTCCTATTATCCAACATACGGCAGCTCTACAGGATATCCGTATCCGTATCCGACGATGATGATGCCACAACAA --- --- --- --- >prot|K06A1.1|cod|K06A1.1|gene|K06A1.1|ann|K06A1.1 encodes an AP-2-like transcription factor. [Source: WormBase] 1098 1 CAACAACAGCAACAACAA 18 CAA 3 50 286 303 26 CAACCTCCAGTTTGTGGAGTCAGCACTTTTACATATGCAAGAGAGTTTCCAGTGAGCAATTCACAACAGTTCTTCAATGTTACTCCCCCA GGGACTGGAGGAAGTGGAGAGGAAGATTACTGTATTCCTAAATCAGAAGATAGAGATCACTCATCTAATTACAGTCAAGTTGCCACAAAA GO:0008270:zinc ion binding; GO:0006508:proteolysis; --- --- >prot|C01G8.9a|cod|C01G8.9a|gene|C01G8.9|ann|let-526 is defined by a single allele that results in early larval lethality. although the let-526 mutation can be rescued by injection of cosmid C01G8, the precise molecular identity of let-526 is not yet known. [Source: WormBase] 5175 2 CAACAGCAGCAACAACAA 18 CAA 3 50 124 141 2 GCTTCGGTAGCTGAAGTTGCACATGGTGGTGGTGGACCAAAGAAAGATGATCAAGTACCCCCTGCTCCTGATGCTTCCATGCCTACTCCT CCAAATTTACCTCCACCTCAACAACCATATGAGCATCCAGCGCAGCAACACCCTCCACAGCATCATAGTGTACCTCCGAACAGTTTTGCA GO:0008270:zinc ion binding;GO:0005515:protein binding; --- --- --- >prot|C01G8.9a|cod|C01G8.9a|gene|C01G8.9|ann|let-526 is defined by a single allele that results in early larval lethality. although the let-526 mutation can be rescued by injection of cosmid C01G8, the precise molecular identity of let-526 is not yet known. [Source: WormBase] 5175 2 CAACAACAACGGTATCATCAACAACAACAACATCAGCAACAACAGCAGCAA 51 CAA 4 23.5294117647059 2353 2403 45 CCGTACGGGTATCCGCCAGGAGCACCACCACCTGCTGGATTCCATCCGAGTCATCCTCAACATCCTCAACATGCACAATATCTCGCATGG GGAGCTCCTGGAGGACCACGACCACCATATCCATATCCAGGTGGACCAGTGCCACCAGGTCCCCCACAAAATCGTATGCCACCGCCGCCA GO:0008270:zinc ion binding;GO:0005515:protein binding; --- --- --- >prot|T13F2.3b|cod|T13F2.3b|gene|T13F2.3|ann|pis-1 encodes an ortholog of mammalian Pax transcription activation domain interacting protein PTIP. PIS-1 has an N-terminal glutamine/asparagine-rich domain and four C-terminal BRCT domains, and is dispensable for obvious functions in mass RNAi assays. mammalian PTIP binds to the activation domain of Pax2 and other Pax proteins, and colocalizes with Pax2 to actively expressed chromatin, and appears to be required for embryonic mitosis (perhaps because of a link between BRCT domains and DNA repair). [Source: WormBase] 3231 1 CAACAACAACAGCAACAA 18 CAA 3 50 520 537 16 GGTCCACCGACTTCCGTTCCGTACGATTATCAGCAAGCACAGATGCAACAGCAACAACATGCTCAGGCAATGGCAGCGGCAGCAGCGGCT CATCTTCAGCAACAACAATATGCCCAGAATCCGCAGCAAATGCACGATTCACCGTATCGGCAACATCAGATGATGCAAATGCATCAACAT GO:0003707:steroid hormone receptor activity;GO:0008270:zinc ion binding;GO:0043565:sequence-specific DNA binding; GO:0006355:regulation of transcription, DNA-dependent; GO:0005634:nucleus; --- >prot|D1007.3|cod|D1007.3|gene|D1007.3|ann|D1007.3 [Source:RefSeq_peptide;Acc:NP_491395] 795 1 CAACAACAACAACAACAA 18 CAA 6 100 70 87 9 AATTTTTTTTCAAAAAAGTGAATGTCTCCAAATAGTCCATCCTCATCAATATGTTGTTGTTCTCGATATTTCCGAAGATCTTCTTCTTCC AATCTTGAAAATATTCAAAGTACTCAGTTAGAACCAATTGAAATCAAAGTAAATGGTCAGTCACATCTGATGATTCCTCACGTGGCAATT --- --- --- --- >prot|W04D2.6a|cod|W04D2.6a|gene|W04D2.6|ann|W04D2.6 encodes, by alternative splicing, two isoforms of an ortholog of human RBM25 (RED120). W04D2.6 is required (in conjunction with RSP-6) for normally rapid growth and (in conjunction with CPF-1 and F59A2.4) for oogenesis and embryonic viability. the long isoform of W04D2.6 has both an N-terminal RNA recognition domain (RRM) that is isoform-specific, and a C-terminal nucleic acid-binding domain (PWI) that is found in both isoforms. W04D2.6(RNAi) animals have a relatively subtle slow-growth phenotype, but display more severe synthetic phenotypes in double RNAi against both W04D2.6 and other putative splicing factors (CPF-1, RSP-6, or F59A2.4). W04D2.6 binds the N-terminal region of long UNC-13 isoforms in yeast two-hybrid assays. by orthology, W04D2.6 is expected to participate in splicing and 3'-end formation, and to bind RSR-1. [Source: WormBase] 2118 1 CAACAACAACAGCAA 15 CAA 3 60 49 63 2 TTAATTTATGAGGGACAAGCCCGTCGTCTCGGAATTACATAAATGGCTTTCAGACAAGGCTATGGAGTGTCTTCGTACCCTCACTATCCA ATTGTTTTCGGACAGATGAGAATGCCGGGCCAGCACACGCCCGCGCAGCAATCAAGCCAACAAAAACCAGATTCGTCGCCAGTTTTTGTT --- --- --- --- >prot|T27C4.4a|cod|T27C4.4a|gene|T27C4.4|ann|EGl-27 Related family member (egr-1) [Source:RefSeq_peptide;Acc:NP_504032] 3069 2 CAACAACAGCAGCAGCAG 18 CAG 4 66.6666666666667 2014 2031 65 GAGCCGGTAGCGCCGACGCCAGCGGCCTCAAATGGAACTCCAGCTTCTCAGAAGGCGGCTGCCACGGCGGCGGTGAACACGTTGACTCCA CGCGCTGCCGCCGCCAACATGCTCATGACGCTGAACAGTGGTGATAAGCAGAATTTGTTGAATGTGGCAAAGGAGGCGCTGGCACGTGGC --- GO:0007186:G-protein coupled receptor protein signaling pathway; GO:0016021:integral to membrane; --- >prot|T27C4.4a|cod|T27C4.4a|gene|T27C4.4|ann|EGl-27 Related family member (egr-1) [Source:RefSeq_peptide;Acc:NP_504032] 3069 2 CAGCAGCAGCAGCAG 15 CAG 5 100 2608 2622 85 TTACAACACGCTCTGACTCAAGCTGCAACCGGCAAGCGAAGCGCCCCGCAGGCCGTGGCATCAGGCGAGCCGTCCGCCAAAATGGCAAAG CTACCAACAGCTTTCGCTGCAAGTGGATCCTCCTCGTGGACACCGATCGTCGCACCGTCGCTAGAAGACGTTGGAAATTCGCTTCTCGCA --- GO:0007186:G-protein coupled receptor protein signaling pathway; GO:0016021:integral to membrane; --- >prot|F10E7.2|cod|F10E7.2|gene|F10E7.2|ann|F10E7.2 [Source:RefSeq_peptide;Acc:NP_495475] 723 1 CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAGGAGGTCAACCTGGTCAG 63 CAA 15 71.4285714285714 187 249 26 GAGTTGAATGAATTCGATAAAGCGGCTTGCGACCAAAGTCAACCCGACTACAGCACACCCGAAGGGCAGCAGGCGTATTGTGCCTATTAT AAACCGTACGCCGCTGCTGCTTATGGAGGCCACGACCAAGCACAACAACCGCAAAATCCATATGCACCACCACCACCAGGAGCGGATCCA --- --- --- --- >prot|F53H2.3|cod|F53H2.3|gene|F53H2.3|ann|F53H2.3 [Source:RefSeq_peptide;Acc:NP_507931] 2004 2 CAGCAACAATTTCAACAACAACAGCAACAGCAGCAAAAAAAGCAA 45 CAA 3 20 613 657 30 ACGGGCATTTTTGAGAAGCAGCAGCAGCAAATGATGCAAGTTAGGCGGAATTCATCGTCTGATGACTCAAAATCGACAACACCATCGGCT AAACGATATCGAAAAACGTTGAGTCAACAGGGAACCACACGGAAAGAAGCATTCGGTGGAAGTCAGGCTATGAGTGAAAGTTCAGAAGAA --- --- --- --- >prot|F53H2.3|cod|F53H2.3|gene|F53H2.3|ann|F53H2.3 [Source:RefSeq_peptide;Acc:NP_507931] 2004 2 CAACAGCAGCAGCAG 15 CAG 4 80 1132 1146 56 CAGGCCGCCTTCCTTCAACAGGCCTTCCAACTTCAGGCTCAACAGCAGGCTTCTCAGGCCCCACAAGGAGCCCACGCACCACCACCACCA CCAACAATGCGATATTATGATGCAAATTCGGATGGATTCTTTTATGAAATGGCATCAGTTGACGGGTGGAAGCGTCGGCAACCGAATAAG --- --- --- --- >prot|Y49A3A.3|cod|Y49A3A.3|gene|Y49A3A.3|ann|Y49A3A.3 encodes a conserved but uncharacterized protein with some similarity to Barwin-related endoglucanase. Y49A3A.3 shares an operon with vha-13, and thus might be a previously undescribed V-ATPase component or ancillary protein. [Source: WormBase] 1173 1 CAGCAACAACAGCAG 15 CAA 2 40 22 36 2 ACGAGAGTTGTAGAATACGTGCCGCCAGAAGTATCACCGGAAAATTTATTGATTTTAGCTTTGAAATAAATGGAATTGGATTCGGTGAAG AACGCTTGCTGTGAATATATTCTACCAATTAAGAAGCGACGGTGTAAGATGCTGGTGAAAAAGGGAAATCGGTTCTGTGGAGAGCATTCA --- --- --- --- >prot|C27H5.3.1|cod|C27H5.3.1|gene|C27H5.3|ann|C27H5.3 [Source:RefSeq_peptide;Acc:NP_495483] 1347 1 CAACAGCAACAACAACAACAA 21 CAA 5 71.4285714285714 73 93 5 CGATACCGTCCATATTGAATGGCGGCTTACGACCAAAGTCAACCCGACTACAGCACACCCGAAGGGCAGCAGGCGTATTGGGCCTATTAT CCAGGAGGTCAACCTGATCAGGATCCGTACGCCGCTGCTGCTTATGGAGGCCACGACCAAGCACAACAACCGCAAAATCCATATGCACCA --- --- --- --- >prot|Y79H2A.1b.1|cod|Y79H2A.1b.1|gene|Y79H2A.1|ann|brp-1 encodes a glutamine-rich protein that is conserved in nematodes, but that has no known homologies or sequence motifs. BRP-1 is able to bypass the need for the S. cerevisiae mating pheromone MAP kinase cascade to activate the mating pheromone-responsive gene FUSl. [Source: WormBase] 1401 2 CAACAACAACAGCAACAGATGCAG 24 CAA 3 37.5 397 420 28 ATGCAACAAATGATGGCAATGCGAATGATGAGAATGAGAAGACTTCAAGCCGCCTACTACCAACAACAACAAATGAAGATGGCCTACATG GAAGAGGCCGCCCGTCAGCAATGGGCCGAGAGATCCCGCTATGAAGAGGAACAACGTCGTCAGTACGAGGCTCAACAGACCTATGCTCAA --- --- --- --- >prot|Y79H2A.1b.1|cod|Y79H2A.1b.1|gene|Y79H2A.1|ann|brp-1 encodes a glutamine-rich protein that is conserved in nematodes, but that has no known homologies or sequence motifs. BRP-1 is able to bypass the need for the S. cerevisiae mating pheromone MAP kinase cascade to activate the mating pheromone-responsive gene FUSl. [Source: WormBase] 1401 2 CAACAACAACAGCAGCATCAGCAGCAACCACAACAGACCCAACAA 45 CAA 3 20 724 768 51 AGATTCTGGCCAAGACCAATGATGCATCAGCAACAATGGGAGAGACCAACTGTCTGGCAGCAACCACCCCAACAATTCTTCTTCCCATCC CCTGAGGACCGTTTCCCACAGGCTCCACAATTCTTCCAACCAATCCCACAACCATCAGTTCACGATAAGATCTACGAGGAACTTCAGAAG --- --- --- --- >prot|F56D1.7|cod|F56D1.7|gene|F56D1.7|ann|daz-1 encodes a protein containing an RNA recognition motif that is required for the progression of meiosis during oogenesis. DAZ-1 is expressed in the germline, and expression levels peak in the proximal pachytene region. cpb-3(bt17).daz-1(tj3) hermaphrodites have a synthetic phenotype of total sterility and masculinization. DAZ-1 colocalizes with CPB-3 in vivo, coimmunoprecipitates with CPB-3, and binds CPB-3 in two-hybrid assays. [Source: WormBase] 1497 2 CAGCAGCAGCAGCAACAACAA 21 CAG 4 57.1428571428571 868 888 58 GAATCAGTTTCTCCACAACCACTTCTTCCAAATCAAAATGTGTTGAACACTCAGTATTCCCAAGGTCAGCAGCAGTGGAATTCCAATGTG ATGGACTCGAACAACGGAGGTCCTTACTATAATGAAAATTATTCTCAAGGCTACACCCGTCCTCATCCATATCAACAGTTTGCTCAATCT GO:0005515:protein binding; --- --- --- >prot|F56D1.7|cod|F56D1.7|gene|F56D1.7|ann|daz-1 encodes a protein containing an RNA recognition motif that is required for the progression of meiosis during oogenesis. DAZ-1 is expressed in the germline, and expression levels peak in the proximal pachytene region. cpb-3(bt17).daz-1(tj3) hermaphrodites have a synthetic phenotype of total sterility and masculinization. DAZ-1 colocalizes with CPB-3 in vivo, coimmunoprecipitates with CPB-3, and binds CPB-3 in two-hybrid assays. [Source: WormBase] 1497 2 CAACAGCAACAACAGCACCATCAA 24 CAA 2 25 1084 1107 72 AGCCAAGGAATGTACCATTCGAGTTATTCCTACATGACTCCTCCACTGGCACCAGGTCAATATCCACAAATGATGTCCGCTCCCTATTGG AGTCATGCATACGCTGGCTATAATCCCGCCTACAACAACTGGGTTGGACCATCTGGAGATATGAATCAGTTCAAACAAAATCCGTCAAAC GO:0005515:protein binding; --- --- --- >prot|T05A10.1a|cod|T05A10.1a|gene|T05A10.1|ann|sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain. SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396). SMA-9 proteins are required for growth to normally large body size. [Source: WormBase] 6201 5 CAACAGGCTCAACAGCAACAGCAAGGGCAGTCTCAA 36 CAA 1 8.33333333333333 1147 1182 18 ATGCAAGCCCAGCTTCAACAGCAACTGCTTCTCCAACAGCAACAGGCTCAGGCTCAACAAGCTCAACAAGCTCAGCAAGCACAACTAGCT AATAGAACAGTTTCTCAAGCACTGCAATATATTCAGTCTATGCAACTGCAGCAAAGAGCCGATGGAACCCCAAACGGATCAACAAGAACT --- --- --- --- >prot|Y116A8C.32|cod|Y116A8C.32|gene|Y116A8C.32|ann|Y116A8C.32 encodes an ortholog of splicing factor SF1, which enables 3' splice site recognition by binding U2AF65 and the intron branch site during splicing complex formation. Y116A8C.32 shares several domains with mammalian SF1 proteins (a U2AF65 binding domain, a hnRNP K homology domain, two RNA-binding zinc knuckles, and a proline-rich C-terminal domain), while also sharing a hydrophilic N-terminal domain (enriched for serine, arginine, lysine, and aspartate) with Drosophila but not mammalian SF1. Y116A8C.32's N-terminal domain resembles RS domains in other splicing proteins. Y116A8C.32 is required for embryonic viability, normally rapid growth, and proper body morphology. [Source: WormBase] 2100 1 CAACAGCAGCAGCAGCAGCAGCAACAACAA 30 CAG 6 60 1852 1881 88 TATGATCACTATCAACAATACGCCTATCCTAATCAATATCAACAACCTTATGGTGCACCTGCACCTCCAGGAGGATCAGCTTACGGTCAC GACTACAGTGATTTCTACACAAGCCCAGGAGCCCGTGGAGGAGCTGGAGCCAAAGCCAACAAAGGATGGTACGGAAGTGGTGGCGGGTCG --- GO:0006508:proteolysis; --- --- >prot|Y54G2A.3a|cod|Y54G2A.3a|gene|Y54G2A.3|ann|Y54G2A.3 [Source:RefSeq_peptide;Acc:NP_500280] 501 1 CAGCTGCAGCAGCAGCAGCAG 21 CAG 5 71.4285714285714 16 36 3 TCAGCTGTCTCAAATCGAAGAAAATCGGCACCAATTCAACATATGGACATGAGAGATTTGGATGACTTGGAATGAATGATCAACGAGGAA CACAGAAGAAAGAAAAAACCAGCGGATGAGGTGACTCAGAAGATGCCGAGTGGTGAAAAGGAGCCGATGGATCCGTACAAACTAGAAGCT --- --- --- --- >prot|ZC376.7c|cod|ZC376.7c|gene|ZC376.7|ann|ZC376.7b [Source:RefSeq_peptide;Acc:NP_872160] 1425 1 CAGCAACAACAGCAGACATGTCAGCAG 27 CAA 2 22.2222222222222 406 432 28 TTCTGGGAGGGAAAAAACGTGACGCTGGAAGCATGGCGACCGACCGACTCATGGCAGAATGGTAGCAGTGTTGGACATCCACATGGTCAT CCGCCCACGCATTCAAGTACAACAGAAACAATGCATGATTTCTCCAATTTTGGAGATAATATGGGCTCCCCGCTCTTCCAATCACCATCA GO:0008324:cation transmembrane transporter activity; --- GO:0016020:membrane; --- >prot|B0513.1|cod|B0513.1|gene|B0513.1|ann|lin-66 encodes an unfamiliar protein, with visible homologs only in nematodes, that was identified in screens for molecules that interact with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1, that is essential for ventral enclosure during embryonic development. LIN-66 is expressed in body wall and vulval muscles, and is also detected in the intestine, neurons, and probably the hypodermis. [Source: WormBase] 1884 1 CAACAACAATCACAGCAGCAGCAACAGCCACCACAG 36 CAA 3 25 67 102 3 AACTCACTCCGTATTGGTAACTGAATGTCTTACGAAATGAATAGTCTCTTCTCGTCGAATCAGCAACCACTCGGAGGGGGACCACCACCT TCGTTATGGTCACTCCAACAGTTTTCGCAGATGGGAGCCCCGGACAACTTTGGGAACCACGCGGTCCCATTCATGCCAACACTCGGAATG --- --- --- --- >prot|T12D8.1|cod|T12D8.1|gene|T12D8.1|ann|Temporarily Assigned Gene name family member (tag-350) [Source:RefSeq_peptide;Acc:NP_499819] 7428 1 CAGCAACAACGTCAGCAGCAGCAGCAAAATCAAGTTCAGCAG 42 CAG 4 28.5714285714286 457 498 6 TCACTACAAATGCAACCGGCACCTCTGCCGTCCAGTTATCCTAGAAGTCAGGATTTCAACGGGGATGTGTACACCCAAATAGCCGCCATG ATGTTGGCCACACAGGCACAGCTTATGGATGAAATTAGCGATGGTGGTGGTACGAATGACAGCGATCGGAATAGTAGTCCATTTTATCAA --- --- --- --- >prot|F39B2.4a|cod|F39B2.4a|gene|F39B2.4|ann|sur-2 encodes a novel protein that is orthologous to the Drosophila and human MED23 mediator subunits. sur-2 is a downstream component of the let-60-ras-mediated signaling pathway and likely functions by regulating transcription of genes essential for a number of developmental processes, including vulval development, larval development, and formation of the gonad and male tail. sur-2 is expressed in all Pn.p cells from the mid-L1 through the L3 larval stage, and then in the vulval precursor cells as they divide, with strongest staining observed in the primary and secondary lineages. sur-2 is also expressed in embryonic and other larval stage cells, including the distal tip cells of the gonad. [Source: WormBase] 4764 1 CAACAGCAACAACAG 15 CAA 2 40 4717 4731 99 ATGAATCCTATGATGCAAAACATGACTCCTCAACAGCAATATCTCTACATGCAACAACTTCAACAACATCAGCAACATCAACAGTACATG CATCACCATCAACACCAACAGCAACCTCAT --- --- --- --- >prot|K10D6.2c|cod|K10D6.2c|gene|K10D6.2|ann|K10D6.2 encodes three isoforms of a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. K10D6.2A-C are worm-specific, with obvious homologs only in C. elegans. K10D6.2A-C are required for embryonic viability in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase] 741 1 CAGCAGCAACAACAG 15 CAG 2 40 691 705 93 TGGATTGGAGCATTCGTATGCACTCTTCTTACAACATACAAGTTTGTTACAGGAGACGAGGAAGATGGAAGAAGATACGAAGATCGTCGT TATCATCACAGCAGCAGATCAACGTGGATCAAC --- --- --- --- >prot|Y48G9A.4|cod|Y48G9A.4|gene|Y48G9A.4|ann|frl-1 encodes a homolog of human FMNL1 (also known as human leukocyte formin) and FMNL2-3, and a paralog of human DAAM1-2. FRL-1 enables Wnt-directed planar cell polarity. FRL-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase] 3348 1 CAAGTCCAACAGCAGCAACAA 21 CAG 2 28.5714285714286 1462 1482 43 AAGGATCGACAGGCGAGAGAAGAGAGAAAACGGCTGGAACAAAAGATTGGAGAGTTGGAAGCTATTCAGAAACAGATGCAGGCCGGGCTT GCGGCCGCCGCCGCCGCAGCAGCAGCAGCTCAAAAATCACCTCCAACACCTCCACCACCGGCTCCAGGACCACACAAAGAGCAACGACGG --- --- --- --- >prot|B0019.1|cod|B0019.1|gene|B0019.1|ann|AMine oXidase family member (amx-2) [Source:RefSeq_peptide;Acc:NP_493236] 2175 1 CAACAGTCACAGCAACAACAGCAA 24 CAA 2 25 67 90 3 TTACAGACTTTGCGTCTACAGTAAATGTTGCGTGGGTGGTGGATATTCATTTGGGCGGCTGTCTGCGTCTATGCACAGAATACACTCTCA CCAACGTCTGCAAATATTAGCAGTTCTAATATTCAGCAAACAATATATGATGTCATCGTTGTCGGAGCAGGACTTACCGGGCTCACAGCA --- GO:0008284:positive regulation of cell proliferation;GO:0031573:intra-S DNA damage checkpoint;GO:0033261:regulation of S phase; GO:0000790:nuclear chromatin; --- >prot|B0041.2a.2|cod|B0041.2a.2|gene|B0041.2|ann|B0041.2 encodes, by alternative splicing, three isoforms of an unfamiliar protein paralogous to AIN-1, and homologous to Brugia malayi 14748.m00068, 14052.m00191, and 14963.m01790. B0041.2 protein binds GEI-4 and GEI-16 in yeast two-hybrid experiments. B0041.2 and its nematode homologs have weak similarity to human TNRC6A (GW182. OMIM:610739) and Drosophila GAWKY. B0041.2 has no obvious function in mass RNAi assays. [Source: WormBase] 2121 1 CAACAGAGGCAGCAGCAGCAACAGCCTCAACAG 33 CAG 3 27.2727272727273 520 552 24 TCTCATATGCCACCATATGGACAACGTGGAAATAATCAGAATCAATACGGGAATCGAATGCAAGGAGGTCAAGGTGGTTATCGAGGGAAT GGATTCAATATGCCACCAATGATGGTTCCACCTGGTCAGCCTCCATTTTATGGTGGAAATCAACCGAATCATCATCATCAACAACCCTCA --- GO:0006508:proteolysis; GO:0005622:intracellular; --- >prot|C32A3.1a|cod|C32A3.1a|gene|C32A3.1|ann|sel-8 encodes a nuclear protein required for LIN-12 and GLP-1 signalling. SEL-8 contains a novel motif shared with W09C5.1 and orthologs of W09C5.1 in S. cerevisiae (YER126c), Drosophila (DMIP259), and also has two prominent glutamine-rich domains. [Source: WormBase] 1473 2 CAGCAACAGCAACAGGAAATGCAA 24 CAG 1 12.5 1057 1080 72 GATCGGATGCCGTCGACGGCTCCACCACCAGCTCAGAATCCACAACACATTGCTCAGCTTCAACAGCAGCAAAATAAGATGAGATTGATG CGAATTGAACAGCAAAGGAGGCAGCAGATTATGCAGCAACAACAACAGCAGCAGCAACAAGAACATCAACGACAACAGATGCTTCTACAG GO:0050661:NADP or NADPH binding; GO:0006098:pentose-phosphate shunt; --- --- >prot|C32A3.1a|cod|C32A3.1a|gene|C32A3.1|ann|sel-8 encodes a nuclear protein required for LIN-12 and GLP-1 signalling. SEL-8 contains a novel motif shared with W09C5.1 and orthologs of W09C5.1 in S. cerevisiae (YER126c), Drosophila (DMIP259), and also has two prominent glutamine-rich domains. [Source: WormBase] 1473 2 CAGCAGCAGCAACAACAACAACAAATGCAGCAACATCATCAA 42 CAA 5 35.7142857142857 1168 1209 79 CAACGAATTGAACAGCAAAGGAGGCAGCAGATTATGCAGCAACAACAACAGCAGCAGCAACAAGAACATCAACGACAACAGATGCTTCTA ATGAATGGAGGTGGACAATTTGCGACGCAGGCACATCAGCAGGCTGCTTATATGCAGCAAATGCAGAGAATGGAGCAGATTCGACACCAA GO:0050661:NADP or NADPH binding; GO:0006098:pentose-phosphate shunt; --- --- >prot|C10E2.3|cod|C10E2.3|gene|C10E2.3|ann|hda-4 encodes a class II histone deacetylase that contains a putative MEF-2 DNA binding domain, a nuclear localization signal domain, and a single catalytic domain and may affect locomotion, body morphology, and growth. interacts with MEF-2 in in vitro assays and is expressed in body-wall muscle, neurons, and hypodermal seam cells [Source: WormBase] 2610 2 CAACAACAACAGCAGTTGCAG 21 CAA 3 42.8571428571429 238 258 9 CGGCAGAAGCAAATGGACCTTATTGGTCACTTTCAACGCGCTCAGCAAGAGCTGAGCGTCCAACACATGCACAATTTATATGCTGCGTTG AACTTGCAAACCGAGAGGAGCGCCGTCAATCCCTTGTTGATTAGCCAGCAGCATTCGACAGAGGATCAAAACTCAGGCCCAGCTGCCCCA --- --- --- --- >prot|C10E2.3|cod|C10E2.3|gene|C10E2.3|ann|hda-4 encodes a class II histone deacetylase that contains a putative MEF-2 DNA binding domain, a nuclear localization signal domain, and a single catalytic domain and may affect locomotion, body morphology, and growth. interacts with MEF-2 in in vitro assays and is expressed in body-wall muscle, neurons, and hypodermal seam cells [Source: WormBase] 2610 2 CAAGTACAAATGCAGCAGCAACAACAACAACAACAA 36 CAA 6 50 2569 2604 98 ATTGCTATTCACAAAAGTTATTGGCCTGCTTTACATGGTCAAGAGGCCGCAATTAACACAACGGAAATGCAATGGAGGAATTTGAAGCTC ACG --- --- --- --- >prot|Y51H4A.12|cod|Y51H4A.12|gene|Y51H4A.12|ann|set-26 encodes a large (1,677-residue) protein with a low-complexity N-terminal region, followed by a PHD-zinc finger and a SET domain. SET-26 has no non-nematode orthologs, but has 96% identity (1616/1679 residues) to its paralog SET-9. unlike its paralog SET-9, SET-26 has no obvious function in RNAi assays. [Source: WormBase] 5034 1 CAGCAGCAGCAGCAG 15 CAG 5 100 2134 2148 42 TTTACCGGACAATCTGGGAGCTCTGCTGCTGCTCGGCAAAGAACTGTCAGTGGAAGTGCCGCACGAGCTCAGACTTATCAGATGCATCAT CATCATCATCAAATGCCGATGGATCAGAGAAAACGACATAGTTCTGGAAGATATGATGCTCTGATGGGAGCGATGCCACTTCAGCAACAG --- --- --- --- >prot|C10C5.6b|cod|C10C5.6b|gene|C10C5.6|ann|daf-15 encodes an ortholog of RAPTOR (the regulatory associated protein of mTOR), and is regulated by DAF-16. daf-15 is required for non-dauer development, at least in some tissues or stages. daf-15(m81) mutants constitutively and irreversibly form abnormal dauer-like larvae (and are thus effectively lethal/sterile). mutants do not form true dauers when exposed to dauer pheromone, yet execute only two molts. [Source: WormBase] 5349 1 CAGCAACAACAACAACAA 18 CAA 5 83.3333333333333 2062 2079 38 ATGGATCCATCAGGAGGACAACATTCACCAAATGCTCAGCCTAGACAACCACAACCACAGCAACCACAACAACTACAACAGCAACCATCA TCTAGACAACCGCAAGGAATTATGAAACCAACGAATGCACAGCCACAAGAAAAGAAGACAATGCTTCGTTTTCAATATTTCCTTCAACTT GO:0004176:ATP-dependent peptidase activity;GO:0004252:serine-type endopeptidase activity; GO:0006508:proteolysis; --- --- >prot|C09F9.3a|cod|C09F9.3a|gene|C09F9.3|ann|C09F9.3 [Source:RefSeq_peptide;Acc:NP_001021945] 2376 1 CAGCAGCAGCTTCAACTTCAGCAGCAACAGCAGCAA 36 CAG 3 25 2083 2118 87 CTTGTCAGAAGGAAATCATCAAAAGCTCCACCGACGCCCGACTACAAGCCACCGCAATTTGGCTACGGTGCTCTTCCAGTTAGCAAGTAC AACGAAAAGAAAGCCAGCCAAGACAAGCATCGTAACATCAATGGGCATGGACATATGAATGGCAATGGAACTCACACAAACGGCAATCAT GO:0005230:extracellular ligand-gated ion channel activity; GO:0006811:ion transport; GO:0016021:integral to membrane;GO:0045211:postsynaptic membrane; --- >prot|Y67D8C.7|cod|Y67D8C.7|gene|Y67D8C.7|ann|Y67D8C.7 [Source:RefSeq_peptide;Acc:NP_500288] 477 1 CAACAGCAACAACAGCAG 18 CAA 2 33.3333333333333 391 408 82 GGTGGAAACAAGTACGGTGGTGGTGGCGGTGGCAGCAAATATGGTGGAGGACAACAACAGCAACCACAGCAACAACAAGGAGGATATGGT CCGAGCAAGTATGGTGGAGGTGGACAAGAGCAGCAGCAGGGAGGAGGAAGCAGTGGAGGAAACTAT --- --- --- --- >prot|F47A4.2|cod|F47A4.2|gene|F47A4.2|ann|dpy-22 encodes a broadly expressed protein, homologous to the human transcriptional mediator protein TRAP230, which is involved in WNT and RAS signaling, as well as in dosage compensation. DPY-22 has a C-terminal glutamine-rich domain that is dispensable for inhibition of RAS-dependent cell differentiation, but is required for inhibition of BAR-1-dependent gene expression. [Source: WormBase] 10497 3 CAACAGCAACAACAG 15 CAA 2 40 8710 8724 83 CATACTCAGAATCAACTGTCACTCGCCCAAAAAGAAAAAGAAAAACAATACTTCCAAGCCAAAAATCTTCAAGCAAGCCAAGCAAACGCT CGTTTTGGAGATGTGGTAGCTGGTAATGTGGCAGGATATGGAAGACCATACGGACAACAGCAACTTGGCGCTTCTGATCAAATGGGTACT --- --- --- --- >prot|F47A4.2|cod|F47A4.2|gene|F47A4.2|ann|dpy-22 encodes a broadly expressed protein, homologous to the human transcriptional mediator protein TRAP230, which is involved in WNT and RAS signaling, as well as in dosage compensation. DPY-22 has a C-terminal glutamine-rich domain that is dispensable for inhibition of RAS-dependent cell differentiation, but is required for inhibition of BAR-1-dependent gene expression. [Source: WormBase] 10497 3 CAGCAAGTAGGACAACAAGCTCAACAACAGCAGCAACAG 39 CAA 2 15.3846153846154 9220 9258 87 GGAGGATACCAACAAGGCCAACAACAATCTGGACAAGGAAGCTATCCACAAGCACAACAACAACAACCAAACCAGTATTCTGGTTCAAAC CCATTGAACCAAAACGTGTCTCAGTCTCAAAGTGCTGCACAATTTGGTCGACCATCTCAGGATTCAGCTTATCAACAAAGTGGATATAAT --- --- --- --- >prot|F47A4.2|cod|F47A4.2|gene|F47A4.2|ann|dpy-22 encodes a broadly expressed protein, homologous to the human transcriptional mediator protein TRAP230, which is involved in WNT and RAS signaling, as well as in dosage compensation. DPY-22 has a C-terminal glutamine-rich domain that is dispensable for inhibition of RAS-dependent cell differentiation, but is required for inhibition of BAR-1-dependent gene expression. [Source: WormBase] 10497 3 CAACAACAGCAGCAACAGGATCAA 24 CAA 2 25 10144 10167 96 CAGAACCAGCGTGGCATGAACCCCGGCGCACAACTTCCACCTTACTCAACAGGCCAGCAACAGCATCAACCTCAACAATCCCAAATTTCT TATCGAAGAATGCAGGCGGCACAAATGCAGCAGCAACCAACTGCACAAGGACAACAAAATCGAATGGGAATGCCTTCTCAGCAGCAGTCA --- --- --- --- >prot|Y37A1B.17b|cod|Y37A1B.17b|gene|Y37A1B.17|ann|Y37A1B.17a [Source:RefSeq_peptide;Acc:NP_001076722] 4404 1 CAGCAGCAGCAGCAGGTTCAA 21 CAG 5 71.4285714285714 3550 3570 80 GCACAGAATGCTCAGTTCGATTGGAACATGGCTGCCAAAACGCTTCCGTTGGCACCAGCTCCACCAATGCAGGTTTCACAGCAGGCTCCA GAAGGAGCAGGTGGAGCCAATTACAATCTGGATCTTGACAATCTGTTCTCTGGACTCTCCACCATTGATTGGGGAGCAAAGACTTCAACA GO:0003677:DNA binding; GO:0006334:nucleosome assembly; GO:0005634:nucleus; --- >prot|F13E6.4|cod|F13E6.4|gene|F13E6.4|ann|F13E6.4 [Source:RefSeq_peptide;Acc:NP_509789] 1329 1 CAACAACAACAACAGGCTCAAAACTCTCAACAACAACAG 39 CAA 4 30.7692307692308 1036 1074 78 GGACTTGTCGACAGTCCGCAACCACCATATCAAGCAATTTCCCCCATGTCATCAACTATGATGCATTCTCATGATCCAAATTTCATGTAC ACACCGCATACATTGCACCAGATCCCAAATCAATACCAAAATAGTCAAATGAACGACGACAGTGCGATGGAAGTCGATTATTCCATGGTA --- --- --- --- >prot|F09C8.2.1|cod|F09C8.2.1|gene|F09C8.2|ann|F09C8.2 [Source:RefSeq_peptide;Acc:NP_510635] 2289 1 CAGCAGCAGCAGCAGCAACAGCAGCATCAA 30 CAG 5 50 415 444 18 CAACCAAGAGTCTCGTTTTCCGACGAGGAACTGTATCAGGCGTTGAACATGTCGCCACTTCCACCGACAGCAACGTTCCATGCTCTTCAT TCCATGAAGCAGCAGCATGCTATGCACTTGCAACAGCAGCCACAAACTGATTATCTTTCTTCTGAAGTTTGCTACCCTTCAACGTCCAGC --- --- --- --- >prot|W10D5.3a|cod|W10D5.3a|gene|W10D5.3|ann|gei-17 encodes a protein containing a MIZ domain (Msx-interacting-zinc finger) that affects embryonic viability, vulval development, and body morphology. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] 2079 1 CAGCAGCAACAACAACAACAACCACAG 27 CAA 5 55.5555555555556 391 417 18 CGACCTGCAACAACATCCCAAGTTCGGTCTCATCCATATGTGCTGCCATCTCGATCTGGAGCTAGTAATCACTTGGTCAATCATCATTAT CCTCACAATCTACTTCATCAACAAATGATGGCGTCACATCATTCACATCTGCAACAGCAGCACCATCCGTCGACGCCGAAAAAAATGTAT GO:0008270:zinc ion binding;GO:0003676:nucleic acid binding; --- --- --- >prot|Y105E8A.24b|cod|Y105E8A.24b|gene|Y105E8A.24|ann|Y105E8A.24a [Source:RefSeq_peptide;Acc:NP_001021683] 3384 1 CAACAGCAGCAACAA 15 CAG 2 40 46 60 1 TCGCCGACTTATAAAACGAGCCAAACGGATGTCACAATATGGTAGATGGGTCTCAACGAGAAGTGGACGCGAATTGTGGAGAGACGAGGC CGGCATCGACGTCAGAGTTCAGGCACCAGTGGCGGAGGCGCTTCAAATTTGGATGCAAATACTCTCAAAGTACTCCCAACTACCACATCG GO:0005515:protein binding; --- --- --- >prot|C08F8.3|cod|C08F8.3|gene|C08F8.3|ann|C08F8.3 [Source:RefSeq_peptide;Acc:NP_502090] 1203 1 CAACTTCAGCAGCAGCAGCAGCAA 24 CAG 5 62.5 955 978 79 ACTACTCCTGCGCAAATGATGCCAACTGCCTCATCGTTCAGGATTCCTTTCGCCCAAGTCTCAAAAGCGCCTGTTGTTGCTCCCTCTTCG CCATGTAGCTCAAACCAGACTGCTCGCATTGGGAACTTTTTGGAAAGGGATCAAGTTCGTGGTAATTTGCTTGGAGTTCCGCTGTCGTCA --- --- --- --- >prot|Y47D7A.13|cod|Y47D7A.13|gene|Y47D7A.13|ann|Y47D7A.13 [Source:RefSeq_peptide;Acc:NP_504226] 936 1 CAACAACAGCAACAA 15 CAA 2 40 676 690 72 CAGCAACAAGCCCCAGCTCAAGGAGCCGGATACCAGCAACAAGCCCCAGCCGCCGTCGTCACTGAGCAACAACAAGTCGGACAAGGATAC GCCCCAGTCCAAGAGCAAGCCCCAGCTCCAGTCCAAGAGCAGGCTCCAGCTGCCTCATACGGAGAGCAGGCTCCAGTCCAAGCCCAACAA --- --- --- --- >prot|F52G2.2b.2|cod|F52G2.2b.2|gene|F52G2.2|ann|RNAi Spreading Defective (see also sid) family member (rsd-2) [Source:RefSeq_peptide;Acc:NP_001040952] 3390 1 CAAAATGAGCAGCAGCAGCAGCAA 24 CAG 4 50 2869 2892 84 TTGGATCGGCGAAATCTTCGCGGAAACACAATCGAAGAGGTCAGAGACGATATTTCGATTCAGAAAAGAATTGCTCATATGAATTTCGGG TCGTCGTTGTCTTCGAGAGGACCTACGAGACCATATTCTCCAGTCGGCAGTTATCAAAGTTCTCATCAAAACTTTGATAATCGTTCGGCG GO:0005515:protein binding; --- --- --- >prot|C07G1.5.1|cod|C07G1.5.1|gene|C07G1.5|ann|hgrs-1 encodes a VHS and FYVE zinc finger-domain containing protein that is the C. elegans ortholog of S. cerevisiae Vps27p and mammalian hepatocyte growth factor-regulated tyrosine kinase substrate (HGS). hgrs-1 activity is essential for molting and thus for proper larval development. consistent with its proposed role in the endocytic pathway, HGRS-1 is also required for proper trafficking of the LRP-1 low-density lipoprotein receptor-related protein 1 and for endosome maturation and regulation of autophagic vesicle accumulation. an HGRS-1::GFP fusion protein is widely expressed, but particularly enriched in epithelial cells. within cells, HGRS-1::GFP localizes to endosomal membranes. [Source: WormBase] 2190 2 CAACAGCAACAACAA 15 CAA 3 60 1597 1611 73 CAGGCACAGATGCAGCAGACTTTGGAGATGATGAGAATGAAAAAACATGCAATGCTAATGGAACAACGCGAGCAAGCTCTTCAAAGATTC GAAATGGCAATGCGTCGACATCAGCAACAAGCTTACTACAATCCACAACAAATGGGTTATGGAGCACCTCCTCCTTCAGGACCTCAACAG --- --- --- --- >prot|C07G1.5.1|cod|C07G1.5.1|gene|C07G1.5|ann|hgrs-1 encodes a VHS and FYVE zinc finger-domain containing protein that is the C. elegans ortholog of S. cerevisiae Vps27p and mammalian hepatocyte growth factor-regulated tyrosine kinase substrate (HGS). hgrs-1 activity is essential for molting and thus for proper larval development. consistent with its proposed role in the endocytic pathway, HGRS-1 is also required for proper trafficking of the LRP-1 low-density lipoprotein receptor-related protein 1 and for endosome maturation and regulation of autophagic vesicle accumulation. an HGRS-1::GFP fusion protein is widely expressed, but particularly enriched in epithelial cells. within cells, HGRS-1::GFP localizes to endosomal membranes. [Source: WormBase] 2190 2 CAGCAACAACAACAACAA 18 CAA 5 83.3333333333333 1795 1812 82 CCACAACAATCATATTATGGATACCAACAAGGACCACAATCACAGGCTCCTCCTCCATCGAGTCAATATCAGCAGTCACATGCTTCGACG TACTATCAACATTATCAGGCAAATCAGACCGTTACTCAACCAGTACAACAAGCTCAACAACAATACCAACAACAATATCAAGGATACTAT --- --- --- --- >prot|K07F5.13c|cod|K07F5.13c|gene|K07F5.13|ann|npp-1 encodes a nucleoporin that is most closely related to the vertebrate nucleoporin Nup54 and Saccharomyces cerevisiae nucleoporin Nup57p. during embryonic development, npp-1 activity is essential for some aspects of nuclear structure and function, as well as for proper mitotic spindle orientation, asymmetric cell division, cell fate specification, and mitotic cell cycle timing. npp-1 is also required for normal oogenesis and levels of fertility and for effective RNA interference (RNAi). an NPP-1::GFP reporter is expressed at all stages of development and localizes to the nuclear envelope. the NPP-1C isoform interacts with itself and with nucleoporins NPP-3, NPP-4, NPP-11, and NPP-13B in yeast two-hybrid assays. [Source: WormBase] 1920 1 CAACAACAACAACAG 15 CAA 4 80 715 729 37 ACGCTTTTTGGATCGAGTACTGCAAAGCCAGCTACAGGCGGATTTTTTGGTTCCAGCTCAGGGTCTACTCTTGGTGGTCTTGGAGCAACT CCTGTTGTTCAGCAGCAACAAGTTATTCAGCAGTATCACCCATTTGTGAAAGCTGTCGGAGATCCAAAGCTCTTTGGAAATGATAATGAT --- --- --- --- >prot|W02A11.3|cod|W02A11.3|gene|W02A11.3|ann|W02A11.3 [Source:RefSeq_peptide;Acc:NP_493231] 1470 1 CAGCAACAACAACAACAGCATCAGCAA 27 CAA 4 44.4444444444444 700 726 47 CGGATGCAATTGGAGCATCGTCTTCAGCAGATTACGGGTCCTGTTCCCGGTTCAGAACACAACTGTATGACGGGATGTCCACACCTTCAT CCGCTTCTGCATATCCAATTGAATCCAATTCCACCTCAACCACAAACGGGTCCCAATTCGGTGTCGCCGACGATTGCTCCAGGAGCCATG --- --- --- --- >prot|T02C5.5e|cod|T02C5.5e|gene|T02C5.5|ann|unc-2 encodes a calcium channel alpha subunit required for desensitization to dopamine, normal flexion and speed during movement, normally low sensitivity of whole animals to serotonin, and neuronal migrations promoted by humoral serotonin. UNC-2 is orthologous to human CACNA1A (OMIM:601011, mutated in familiar hemiplegic migraine or episodic ataxia 2) and to Drosophila CACOPHONY. UNC-2 is expressed primarily in motor neurons, several sensory neurons, and HSN and VC neurons controlling egg-laying. [Source: WormBase] 6264 1 CAGGATCAACAACAACAACAACAA 24 CAA 6 75 5584 5607 89 TACCAGATGTCAATTAGAGACCCGATAATTAGGCGTAATCGCTATAATACAATGGAACACTCGCGATCTTCCCACGATCCACAATATCAT CCACATCACCAGCAACACTCACAACATTTGCAACATTCACACCACAAAACGTACCAAAATCATAATCAATATTCAAGAAGTCCAATCTAT --- --- --- --- >prot|F57A8.2b|cod|F57A8.2b|gene|F57A8.2|ann|F57A8.2a [Source:RefSeq_peptide;Acc:NP_001041126] 1143 1 CAACAGCAGCAACAACAACAA 21 CAA 4 57.1428571428571 214 234 18 GGTGGTTATTACTCTCAACAAAGTTCAAATCAAGGCTTCGACGGGTATGGACAGCAAAGTCCTACACAGAATCAATACGGAGGATACGGG AGTTATGGGCAAAATAATGGTTTTGGAGGCTTCCAGCCACAGCAATTAATGTCGGATCCTATGTTAAATGCAGCAAAACAATTTGGAGGT --- --- --- --- >prot|T23D8.9b|cod|T23D8.9b|gene|T23D8.9|ann|sys-1 encodes a novel protein that contains three divergent armadillo repeats. during gonadogenesis, SYS-1 functions in a Wnt/MAPK signaling pathway as a dosage-dependent beta-catenin-like transcriptional coactivator required for specification of distal cell fates. consistent with its role as a beta-catenin, SYS-1 interacts, in yeast two-hybrid and coimmunoprecipitation assays, with the POP-1/TCF transcription factor with which it can stimulate transcription via TCF binding sites. in two hybrid-assays, the POP-1/SYS-1 interaction requires the N-terminal beta-catenin binding domain of POP-1, and most of the SYS-1 protein. a VNS::SYS-1 reporter fusion protein is expressed in several tissues during embryonic and larval development and localizes to both the nucleus and cytoplasm as well as to what appears to be the centrosomes. in many tissues, SYS-1 is distributed asymmetrically, in a manner reciprocal to the asymmetric distribution of POP-1. [Source: WormBase] 720 1 CAACAACAGCAGCAGGTTCAACAACAACAGCAGAGGCAA 39 CAG 3 23.0769230769231 226 264 31 CCATATCATCCTCAACAACATCCTAACTATATCTCAATGCAACCTCCTCCTTCCCAACAGCAACAGATGACTCCTCAAGCATTGTCGACG CTATACTCGTCACCGTCACCTTCACGAGGTCCAGCGGCTCCCGCACAGAATCAAAAATTTCGGACAGAACAATGGATCAACAATCAAGCA GO:0008270:zinc ion binding; --- --- --- >prot|Y42H9AR.1.3|cod|Y42H9AR.1.3|gene|Y42H9AR.1|ann|Y42H9AR.1 [Source:RefSeq_peptide;Acc:NP_501354] 1521 2 CAACAACAACAACAGCAACAAGCTTACCAG 30 CAA 4 40 1096 1125 72 TCTCCTGCTCCTGCTCCAGTGTCTTCACCAACACCCGTTCAACAATACCAACAATCATATTCTCAAGCTCAGCCACCTGTTGATTACTAC CCACCAGTAAATCCACCAACAAGTTATCAAGCATATCAACCGCCAGTTCCAACTTCATATTACCCTCCAGCTGCCTCTACTGCTTCAAAT --- GO:0007165:signal transduction; GO:0016020:membrane; --- >prot|Y42H9AR.1.3|cod|Y42H9AR.1.3|gene|Y42H9AR.1|ann|Y42H9AR.1 [Source:RefSeq_peptide;Acc:NP_501354] 1521 2 CAGCAACAACAGCAG 15 CAA 2 40 1474 1488 97 ATGCCATCATTAAGCTCAATTGGAATCACACAACTTGCTACTCCACCAGTTCCCGGTGCAACATCCTATCAACCACCGTCGTTCCCACCA TATGGAGCATATCCACCTGCTCCACCACAG --- GO:0007165:signal transduction; GO:0016020:membrane; --- >prot|Y94H6A.11|cod|Y94H6A.11|gene|Y94H6A.11|ann|Y94H6A.11 [Source:RefSeq_peptide;Acc:NP_001041062] 864 1 CAACAACAACAACAACAGCAGCAACAACAA 30 CAA 5 50 4 33 0 GATCGTATTGTAGATGATATTGAACGGTTCAATGCAATCGCCCAACTCGAACAACTTGAACATGATGATACCTGCGACGACATTTAAATG GCCCCCCATCCCCATCAAAATCAGCATGCACAATTAATAAATCGAATCATATCATCTGCATATAATAATCAACATGATAATGGATCTTTT --- --- --- --- >prot|Y66D12A.12|cod|Y66D12A.12|gene|Y66D12A.12|ann|Y66D12A.12 [Source:RefSeq_peptide;Acc:NP_499490] 1032 1 CAGCAGCAGCAGCAGCAA 18 CAG 5 83.3333333333333 493 510 48 AGACCTTCCTCGAAGGCTATGAAGACGTCGGATACACCGTTAACAGGCCACGATCAGATTCTGGCCCTTCTCTCAAATCTGATGTCGGCG GCTCCCGTGGCAACCCCGACGATTCCTGCCAGCTGGATCGACCAGCTATTGGCAGCCACCCCGGCTCTCCTTCCCTTCATGCCCTCTTCA --- --- --- --- >prot|F16C3.1|cod|F16C3.1|gene|F16C3.1|ann|F16C3.1 [Source:RefSeq_peptide;Acc:NP_492672] 1200 1 CAACAACAGCAGCAACAA 18 CAA 2 33.3333333333333 739 756 61 AACTCATTCTCCACATATCGGTATCGTCAATGCATGAAAATCTACTCGTCTGGCGTGCTCCGTGTTCGATTTGTGCGTGCTCCAACAACT CTCAACAATGATACCATTCAATTTGAAGAGACAACAGTGAAAAAATATCTTCTGAGCACAGACAATACACATTCAAATCTTCCCACGAGT --- --- --- --- >prot|T13H2.5a|cod|T13H2.5a|gene|T13H2.5|ann|spat-3 encodes, by transcription from alternative promoters, two large (1092- and 2471-residues) proteins. while residues 162-228 of the larger SPAT-3 protein encode a Ring1 type of zinc-finger domain (like that seen in SEX COMBS EXTRA, an E3 ubiquitin-protein ligase RING1 protein of Drosophila melanogaster), the bulk of SPAT-3 has no obvious similarities to other proteins. SPAT-3 is specifically required for PAR protein-dependent cell-polarity, and this requirement is independent of PAR-2 activity. as with par-3, par-6, pkc-3, and cdc-42, inactivation of spat-3 (by RNAi or mutation) strongly suppresses the embryonic lethality of par-2(it5ts) at restrictive temperature. as with nos-3, spat-3 also suppresses par-2(lw32), a strong loss-of-function allele. while spat-3 par-2 double mutant embryos require PAR-1 for viability, PAR-1 does not regain posterial cortical localization in these embryos, but is instead diffused through their cytoplasm. [Source: WormBase] 7416 1 CAACAACAGCAGCAGCAAATTCAAATGCAGCAACAGCAACAGCTGGCTCAACAA 54 CAG 3 16.6666666666667 6706 6759 90 CAACTTTTCATGCAGCTTCAACTTCAACAACAACAACTGATGCAGCACCAACTTCAGCAGCAATTACAAATGCAACAGCATCAGCAGCAT GGCCTAGTGCCAAATGTTTCCAGTGCATGGCTCCAGCAGCAGGCTCAGTTGGCTCAACAACAGCAACAAGTGGTTCAACAGAACCTTCTG --- --- --- --- >prot|R10E4.2c|cod|R10E4.2c|gene|R10E4.2|ann|Temporarily Assigned Gene name family member (tag-310) [Source:RefSeq_peptide;Acc:NP_497856] 453 1 CAACAACAACAGCAACAACAGCAGCCACAACAAGGGCAAGCTCCCCAGCAACAACAACAG 60 CAA 3 15 22 81 5 AATCAACAGTTTTACAACCCGAATAATGGACGCAACAAAAAGTATTTCCAGCCGATGAATCCACAATAAATGAACGCATCTTCGGCTCCA GGACCACCACAACATCAATATCAACAACAACGCCCATTCCATGGACACTCGATGAACAATCCTGAAATGCTCCAGCGAATGCAATATCCA GO:0005230:extracellular ligand-gated ion channel activity; GO:0006811:ion transport; GO:0016021:integral to membrane;GO:0045211:postsynaptic membrane; --- >prot|D2045.1b.2|cod|D2045.1b.2|gene|D2045.1|ann|atx-2 is required for early embryonic patterning. it encodes an ortholog of human ataxin-2, which when mutated leads to spinocerebellar ataxia 2 (SCA2. OMIM:183090). [Source: WormBase] 1905 2 CAGCAACAGCAACAGCAACAACCGCAGCAACAACAA 36 CAA 3 25 1165 1200 61 TATCAACAGAGATATCAGCAGCCACAAGTGTACATGATGCCTCCACAGGGTCAGCAGCAGCAGCCGAGATACCAGGGTCCTCCACCACCA TTCTCCGGAGAGCAAAGTCGCCCACAATCACATCCGAATAGTCAGCCAACGACTCCGGGACCACGTGGCGAGTTGCCAAAGATGAGCGGT --- GO:0006869:lipid transport; --- --- >prot|D2045.1b.2|cod|D2045.1b.2|gene|D2045.1|ann|atx-2 is required for early embryonic patterning. it encodes an ortholog of human ataxin-2, which when mutated leads to spinocerebellar ataxia 2 (SCA2. OMIM:183090). [Source: WormBase] 1905 2 CAGCAACAACAACAACAGCAACAGCAACAAATGCACCGCCAG 42 CAA 4 28.5714285714286 1729 1770 91 CAACATCCTCAACAAAGTCTTATGGGCGAGCGATCTGATCAAGGATTCCCGACGTCGGGATACTTTGACTACCGTACAATGCCAAACTAT AATTCGCTTCCACAGCAGTTCCAAGGCAATCAAGGTGTAAATCCATCTGGTCAACAATCTGGTCCACCACCACCGCCACCACCGTCTCAA --- GO:0006869:lipid transport; --- --- >prot|R12B2.5b.2|cod|R12B2.5b.2|gene|R12B2.5|ann|mdt-15 encodes, by alternative splicing, two isoforms of a Mediator subunit orthologous to human MED15 (OMIM:607372, deleted in DiGeorge syndrome). together with NHR-49 and SBP-1, MDT-15 is required for normal fat accumulation, for expression of fatty acid (FA) desaturase genes (fat-5, fat-6, and fat-7), for normal levels of mono- and polyunsaturated FAs (PUFAs), and for viability, fecundity, mobility, and normally long lifespan. several of these phenotypes can be at least partially suppressed by supplying PUFAs in the food medium. in part through NHR-49, MDT-15 participates in basal and fasting-induced transcription of numerous other metabolic genes, such as gei-7 and acs-2. independently of NHR-49 and SBP-1, MDT-15 ensures appropriate transcriptional response and survival in response to toxins and heavy metals by inducing select detoxification genes encoding such as cdr-1, cyp-35C1, gst-5, mtl-1, mtl-2, ugt-1, ugt-8, and others. mdt-15 is expressed at constant levels from embryos to adulthood, in several head neurons and intestine. MDT-15 binds NHR-49 and NHR-64 in yeast two-hybrid assays, and SBP-1 in GST pull-down assays. [Source: WormBase] 2334 1 CAACGTGCAGCTGCCCAACAACAGCAACAACAACAACAACAGCAGCAACAGCAA 54 CAA 5 27.7777777777778 994 1047 42 TCAGTTCTTGAATCACTTATCAATCAGCCTCAACAATATCCAGGACATCACAATCAGATGGGCCCACCTGGAGATCGAAATGTTGCTGCT CGACCCGGAATGGTTCCAAACCAGGGAATGATGAGTTCCGAGGATCAAACCGTGTATTCTGCGAAATTGAGAAATATGCGTGGAAGCTGC GO:0008312:7S RNA binding;GO:0000166:nucleotide binding;GO:0017111:nucleoside-triphosphatase activity; GO:0006614:SRP-dependent cotranslational protein targeting to membrane; GO:0016020:membrane;GO:0048500:signal recognition particle; --- >prot|T06D8.3|cod|T06D8.3|gene|T06D8.3|ann|T06D8.3 [Source:RefSeq_peptide;Acc:NP_496399] 1191 1 CAACAGCAGCAACAACAGCAGCAGGGACATCAA 33 CAG 3 27.2727272727273 1138 1170 95 AACGGCACACTGCGAAACCGTCATAACCAAGGAAATCGTCAATACGAGGTGACGACAACAACGGAATCCTTCCATAGAACCATCAGTCCA AATGATGGATATCGGTAC --- --- --- --- >prot|W05H7.4e|cod|W05H7.4e|gene|W05H7.4|ann|W05H7.4b [Source:RefSeq_peptide;Acc:NP_741719] 2001 1 CAGCAGCAGCAGCAGCAA 18 CAG 5 83.3333333333333 958 975 48 CTGCTTCAGGTCAAGCCGAACCAGGGATTCCACACGTTGCCACTCTACCATAGCCAACGCCCGGAGAACCCTCGACGTCCGATGTACGCA TCAGCCCACCAGACGCCGACTCCACACATCCAGCAAGTGTTCCAGGAAACGGAACCGGTCACCAACTACTACACGGCCACCACCTCTGTC --- --- --- --- >prot|Y49E10.29|cod|Y49E10.29|gene|Y49E10.29|ann|Putative uncharacterized protein. [Source:UniProtKB/TrEMBL;Acc:A3FPL3] 1680 1 CAGCAACAACAGCAAGCTCAG 21 CAA 2 28.5714285714286 97 117 5 CGTTTTTTAGTTTTCGGTTTGCTGTTCGTATCAGTTGCGGGTCAACAGCAAGTACCTGTAATCCAACAGGCTCCGCCAAATTCACCAGCT GCTCATGCTCCACCGGCTCAGGCCAAGCCGATCGTCCAACAAACCCAACCTGCTCAAAAACAACAAGCTCAAGCTCCACCAGCTGCTCAG --- --- --- --- >prot|C34G6.7a|cod|C34G6.7a|gene|C34G6.7|ann|pqn-19 encodes, by alternative splicing, two isoforms of a putative Janus kinase substrate ('signal-transducing adaptor molecule') that is required for maintaining meiotic arrest and for acetylcholine neurotransmission. PQN-19 is located in puncta of the DA motor neurons. PQN-19 is required in the germline for arrested oocytes to continue responding to an inhibitory signal from somatic gonadal sheath cells, before the oocytes have been induced by major sperm protein (MSP) to exit meiotic prophase. PQN-19 has an N-terminal VSH domain, a central ubiquitin-interacting motif and SH3 domain, and a C-terminal glutamine/asparagine (Q/N)-rich domain. PQN-19 is orthologous to human STAM (OMIM:601899) and STAM2 (OMIM:606244). [Source: WormBase] 1374 1 CAACCTCAACAACAGCAACAACAA 24 CAA 3 37.5 1315 1338 96 CAACAACAGCAGCCACAACAATATCCTCCACAACACTATCCGGCTCCTGGAGCACAACCACAGTACGCATGCCCACCGAATTCTGTTCCC TGGCCTGCTCCGTCTTCACAGCCTCAACAATAT --- --- --- --- >prot|M6.1c|cod|M6.1c|gene|M6.1|ann|ifc-2 encodes three isoforms of an intermediate filament protein dispensable for viability but required for normal movement, growth rate, body size, body shape, and cuticle strength. IFC-2 is present in the cytoplasm of intestinal cells, and at the desmosomes of intestinal and pharyngeal cells. [Source: WormBase] 2058 1 CAGCAACAACAGCAG 15 CAA 2 40 886 900 43 ACCGAGGAGTATAAAATCCAAGAAGAGTACATAGTTCAGCGATATGATAATGGAAGCTCTCCAAACTATCAGAGACAAGAGCAAGGATAT CACCGGAGCAGAGAATACAAAACGCATCGTCAGGAAAAGCAAGAAAACTACAACCAGCGAAGTTACAGTGCAACTGAAAATCGAGAAGTT --- --- --- --- >prot|C14B9.6c|cod|C14B9.6c|gene|C14B9.6|ann|gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] 5352 5 CAACAACAACAGCAGCAGCAGCCACAGGCACAG 33 CAG 4 36.3636363636364 2215 2247 41 AGGCCCACACCAACCTCTTCATCATCCCATCTCATCGGCTCAAGCAGTGTTGGCGGCAGTGAACGAGAGCTCGGTGGGCGTGGTCTTGTC AGTGCCGCGCCTCCAGTGACCGTCTCTACAGCCGCTGCTGCAACAGCCGAGAGACTCGTCAATGCCACGTCGCCCTCACCCTCTGTCGCC --- --- --- --- >prot|C14B9.6c|cod|C14B9.6c|gene|C14B9.6|ann|gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] 5352 5 CAGCAACAACAGCAGCAACAACAACAGCCACAACAA 36 CAA 3 25 2614 2649 48 TCTACGCCTGCTCAGATACTCACGCCGACTCCAGTTCGACCGACTGCGGCGTCAACTCCTTCTATGGATCAATTTCTTGGGTTATTCAAG TCGAATCTTATGCAACAACTTGGAAATATAAATCCTCAGTTTCTTGCTCTTCTTCTTCAACAACAACAGCAACAGCAACAAGTTCAACAG --- --- --- --- >prot|C14B9.6c|cod|C14B9.6c|gene|C14B9.6|ann|gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] 5352 5 CAACAACAACAGCAACAGCAACAAGTTCAACAGGCACAGGTACAG 45 CAA 3 20 2707 2751 50 CAACAACAGCAGCAACAACAACAGCCACAACAATCGAATCTTATGCAACAACTTGGAAATATAAATCCTCAGTTTCTTGCTCTTCTTCTT GCAGCTCAAACTCAAGGATCTCTTACATCTGGAACTCCATTTCAAGCACAGCAAAGACCAGATGAAGCACTTCAGAAGTTATTTTCTAGT --- --- --- --- >prot|C14B9.6c|cod|C14B9.6c|gene|C14B9.6|ann|gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] 5352 5 CAACAACAGCATCTACAGCAACAACAGCAA 30 CAA 2 20 3835 3864 71 CAGAACAATATTGGAATTCGTCAAGCTCAGCCTCAAGATCGTGAGAAGCTTCTCCAAGAACAACAGTTGAATCAATACCTTTTTGCTGCT CATCATGGTACCCAACCAGAGCAAAAATCAAAGAGAAAATCAGGAATTGAAAGCATCACAAGTATGCAAGGTGCACCTCATCGTCATATT --- --- --- --- >prot|C14B9.6c|cod|C14B9.6c|gene|C14B9.6|ann|gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] 5352 5 CAACAATTGCAACAGCAGCAGCAA 24 CAG 3 37.5 4759 4782 89 CTTTCCGCGGCGGAGAAGCTCGCACTACAACAATATCAAATTCATAGTGCTCATCAGAAATCTCAACAACAAGCTCAACTGCAGGCGGCA GCCAGGCCTGATCATTACGAGAAATTCCATCTTTTGCGTCCCAATGCGGAAATTGTCCGGCCGATCCCAACAACGTTTTCTCATTTTTTG --- --- --- --- >prot|W05F2.4a|cod|W05F2.4a|gene|W05F2.4|ann|W05F2.4a [Source:RefSeq_peptide;Acc:NP_001032983] 6369 1 CAACAGCAACAGCAA 15 CAA 1 20 5326 5340 83 ACAAGAGGAAGAGCTCAGAACTTTGTGGCTCCTGTCGCGGAGCCAATGACCTCAAAAGCTCCCATCTATTCCCAGGCTGTCCGTCCGAAA AAGTCGCTGGACGAGGTGACGAGCATGCTCAACAGAGCAGTTTCTCAGTTTGGAAATGAGCAACGTCAGGCTTATCAGCATCCGACGGCC --- --- --- --- >prot|F59F3.2|cod|F59F3.2|gene|F59F3.2|ann|F59F3.2 [Source:RefSeq_peptide;Acc:NP_509837] 1293 1 CAGCAGCAACAGCAGCAACAACCATTCCAA 30 CAG 2 20 1030 1059 80 GTTTCCACATCTAGAAACAGATTAACATCAAATAACAATGATGCTGTAGACGATTATGAAGCCGAAGTAGAACGGCATGTGACTCCCAGG AGAAGACGATGGCAGAAAACTAACCAACAAAACCAACGTGACATGTACGTTAACCTACGAAAAAACACACACTCGGATTTGATTGATGTC --- --- --- --- >prot|C45E5.6a.1|cod|C45E5.6a.1|gene|C45E5.6|ann|Nuclear Hormone Receptor family member (nhr-46) [Source:RefSeq_peptide;Acc:NP_001023065] 1587 1 CAACAACAACAACAA 15 CAA 5 100 70 84 4 ACTGCCCAAACCACTCTCTAGATGAAAAGTGATTGGTCCACTGATTTCTTCCATCAGTCTCAAACCCCAAATCCATATCCACCGATTGTT CCACCACATACGTCATCATCATTCTTCAATACAAATCATCAACTGAATTCTCACTATTCTTCTCCAATTCATCAACCGCCAACTAGTCTT --- --- --- --- >prot|C07A12.7a.1|cod|C07A12.7a.1|gene|C07A12.7|ann|C07A12.7a [Source:RefSeq_peptide;Acc:NP_508777] 1314 1 CAACAACAACAAAATCAGCAACAGCAACAACAACCACAGCAAGGCCAACAA 51 CAA 4 23.5294117647059 625 675 47 TTCCCGGCGGCTGATCTTGATACTCTGGCTCCAATTAAAACCCCAAAACGAACAGTATTTAATCAACCTCCACCGGCAACCCTAGATGAT AACCCCCAATCGACATACGACGTTCTCACCATCCGCGAGCAGGGACAAGAGCCAATCTCCGCAACACCAGCGCAATTGACCAAATTGCGG --- --- --- --- >prot|Y69H2.14.1|cod|Y69H2.14.1|gene|Y69H2.14|ann|Y69H2.14 [Source:RefSeq_peptide;Acc:NP_872207] 1017 1 CAACAACAACAGCAA 15 CAA 3 60 319 333 31 GTGACCGGACAACAATCACGTATCAAGAGACAATACGTCACTGGGCCAATGGGAGGAGGTGGCGGGTATGGCGGAGGCGGCTACGGTCAC AACTACGGCCACCAGGGATACGCCCAACGCCCACAACAACCCCAACCAGTGTACCGTCCATCTGCTCCAGTCTACCAGCCACAGCCACAG --- --- --- --- >prot|Y73B6A.5a.1|cod|Y73B6A.5a.1|gene|Y73B6A.5|ann|The lin-45 gene encodes an ortholog of the vertebrate protein RAF which is required for larval viability, fertility and the induction of vulval cell fates. [Source: WormBase] 2442 1 CAACAGCAACAACAA 15 CAA 3 60 1909 1923 78 AATATATTCCTTATGGATGACATGTCAACGGTAAAAATTGGAGATTTCGGCTTGGCAACTGTCAAAACGAAATGGACAGTGAACGGAGGT CCAACAGGAAGTATTCTCTGGATGGCACCTGAAGTCATCAGAATGCAAGATGATAATCCATATACCCCACAGTCTGATGTGTATTCTTTT GO:0005524:ATP binding;GO:0004713:protein tyrosine kinase activity;GO:0004674:protein serine/threonine kinase activity; GO:0006468:protein amino acid phosphorylation; --- --- >prot|F42A6.7c|cod|F42A6.7c|gene|F42A6.7|ann|The hrp-1 gene encodes a homolog of the human DRPLA gene (OMIM:125370), which when mutated leads to dentatorubral-pallidoluysian atrophy or to Haw River syndrome (OMIM:140340). [Source: WormBase] 927 1 CAGCAACAGCAGCAA 15 CAG 2 40 778 792 84 CAAGGCGGATGGGGAGGCCCACAACAGCAGCAAGGAGGTGGTGGCTGGGGACAGCAAGGCGGCGGCGGTCAAGGCGGATGGGGAGGACCA GGAGGCTGGGGAGGTCCTCAACAAGGAGGCGGCGGCGGTGGCTGGGGAGGCCAAGGCCAGCAGCAAGGCGGCTGGGGAGGTCAATCCGGT --- --- --- --- >prot|Y63D3A.5.1|cod|Y63D3A.5.1|gene|Y63D3A.5|ann|human TFG related family member (tfg-1) [Source:RefSeq_peptide;Acc:NP_493462] 1461 2 CAGCAGCAGCAGCAACAATTCCAG 24 CAG 4 50 772 795 53 GCGATTCCGCCACCGAACGCGACGATCCCGTCGTTCCCAACGTCGAATGCGGCGAGCCCACCAGTTCAGGAGTTTGCTCCACCGCCTCCA GCTCCACCACCACCGATGGCGTCGCACTCTTCGATCTCGTCGACTCCAGTGCAGCAGCAAGGATTTGCTCCACCGCAGCAGTTTGGCGGG --- --- --- --- >prot|Y63D3A.5.1|cod|Y63D3A.5.1|gene|Y63D3A.5|ann|human TFG related family member (tfg-1) [Source:RefSeq_peptide;Acc:NP_493462] 1461 2 CAGCAGCAGCAGCAGCAA 18 CAG 5 83.3333333333333 934 951 64 GTGCAGCAGCAAGGATTTGCTCCACCGCAGCAGTTTGGCGGGCCACCACCGTCTGGACCACCATCAGAGTATGGAGGATATGCTCCACCA TTCGGAGCCCCACCACCGCAGGGAGCTCCCCAGCAAGGATTTGGAGCACCGCCACAAGGGCCACCACAGGGAGGACCACCACAAGGATCC --- --- --- --- >prot|M01E11.7c|cod|M01E11.7c|gene|M01E11.7|ann|Temporarily Assigned Gene name family member (tag-163) [Source:RefSeq_peptide;Acc:NP_491637] 2850 1 CAACAACAGCAGCAAGAACAA 21 CAA 2 28.5714285714286 874 894 30 TTTGATGCAGTGACTGACCCTCTCGATGACGTGCTAGAATCCACGAAACGTCTTGGATCCGCCTATTCCGTTGGAGATGTTCGTGGTGGA CATAATGCTTCGAATGATTTCAATTTCTCGAATACATTGAATAACACTCCAACAGATTATAGACAGCATTACCGTAATCGTAATTGTCAA GO:0005515:protein binding;GO:0008270:zinc ion binding; --- GO:0005622:intracellular; --- >prot|Y75B8A.8|cod|Y75B8A.8|gene|Y75B8A.8|ann|Y75B8A.8 [Source:RefSeq_peptide;Acc:NP_499581] 2148 4 CAGCAGCAGCAGCAGCAGCAGAATCAG 27 CAG 7 77.7777777777778 343 369 16 TTTCAACAGGAAGTTCATAATGTGAACGAGAGGATTCGCGGAGCAATGACTCAATACGCGGCACAATGCAGTCAACGGGCAGCGGCGGCT GCGGCGGGACAAATGCCGCCACCTCAGATGGCACCTGTGATGATGAGTGCAGCTGAAAAGAAGAAGCAGATGGAAATGCAGAAGCACCAA --- --- --- --- >prot|Y75B8A.8|cod|Y75B8A.8|gene|Y75B8A.8|ann|Y75B8A.8 [Source:RefSeq_peptide;Acc:NP_499581] 2148 4 CAGCAGCAGCAGCAGCAG 18 CAG 6 100 529 546 24 ATGGAAATGCAGAAGCACCAACGGATGGCTCAGCAGCAACAAATGCAACAGCAGCAGGGAGGAATGAGCTTTCCACCTGGATCGACACTT ATGAGGATGCAGTTTCAACGACAGCAGCAGCAGCAGCAACAACAACTTCAGCAAAATCCACAGAATCAGGGTTACGGTAGAATGGGCGGA --- --- --- --- >prot|Y75B8A.8|cod|Y75B8A.8|gene|Y75B8A.8|ann|Y75B8A.8 [Source:RefSeq_peptide;Acc:NP_499581] 2148 4 CAGCAACAGCAGCAG 15 CAG 3 60 658 672 30 CAGCAGCAGCAGCAGCAACAACAACTTCAGCAAAATCCACAGAATCAGGGTTACGGTAGAATGGGCGGAGGGCCACAGTACCCTGGAATG TTGACACATCAGAATCCTGGAATGCAGCAGCAGCAGATGCAACAACCACAAATGCAACAGACGCCGCAATCCCACGGCCCGATTCCGGTC --- --- --- --- >prot|Y75B8A.8|cod|Y75B8A.8|gene|Y75B8A.8|ann|Y75B8A.8 [Source:RefSeq_peptide;Acc:NP_499581] 2148 4 CAGCAGCAGCAACAAATTCAGCAGCAG 27 CAG 3 33.3333333333333 967 993 45 CAGCAGCAGCACCCGGGAATGGGTGGTCCAGAGATGGGTGGTCATATGCATGCTCAGCAGGGAGCTCCAGGCTCTCAGGCAGCACCAGTT GCGCCTCCTCAAGCTCCAGCTGAAAAGACGGAAGATATGAAGTACAAGGAGCTGCTGAAAGAGATGAAGCTTCAGTACTTGGAGGCTCTG --- --- --- --- >prot|F39H11.3|cod|F39H11.3|gene|F39H11.3|ann|cdk-8 encodes a member of the cyclin-dependent serine/threonine protein kinase family orthologous to human CDK8 (OMIM:603184) which functions in transcriptional regulation with the positive regulatory factor cyclin C, is associated with the RNA polymerase II holoenzyme, and may regulate gene-specific activators. CDK-8 also contains a glutamine/asparagine-rich domain. loss of cdk-8 function via RNA-mediated interference (RNAi) results in sterility in the injected hermaphrodite, suggesting that in C. elegans, CDK-8 may play a role in germ-line development. [Source: WormBase] 1767 1 CAACAGCAACAACAGCAATGGCAACAACAA 30 CAA 3 30 1726 1755 97 ATGCGTGCTCCAGGAGTTCCACCACAAGGATATATGCCTGGTCGTGGAATGGCTCCCCCTCAAATGGGACAACAGCAACCCGGTCCAAAT TATCATCGA --- --- --- --- >prot|Y54G2A.26b.1|cod|Y54G2A.26b.1|gene|Y54G2A.26|ann|Y54G2A.26a [Source:RefSeq_peptide;Acc:NP_001023499] 1650 1 CAACAGCAACAACAA 15 CAA 3 60 184 198 11 ACATCGAATCCCTATTACCAACCTCCTGTTCCACCACAACATCATCATATGCAACCACAGGCGCCTATGATGTCCCCCGGAATGCATGGA CCATATTATAATACGCAATCACCATTGACAGGAACTCCACCATCCATGAGCTACGGTACCCCACAGATCCCTGCTCCACCACCAACCTCG GO:0004190:aspartic-type endopeptidase activity; GO:0006508:proteolysis; --- --- >prot|Y17G7B.24|cod|Y17G7B.24|gene|Y17G7B.24|ann|Y17G7B.24 [Source:RefSeq_peptide;Acc:NP_001022415] 354 1 CAACAGCAGCAGCAA 15 CAG 3 60 214 228 61 ATCAAGAAAATCTCAATTCCCACGGTTAACGTGCACAAAATGTCCTTGACAAATGCAGAATGTTTAACAGTACATCAACAAATTCCACCA CTTTACCCAAATTCAATGGTTCCTCCATCCGACCGTTTCACCAGAAGTGCATCCTCATCACCAAGACGGGGCGGAGCTAATGGGGGTGGA --- GO:0006810:transport; GO:0016020:membrane;GO:0016021:integral to membrane; --- >prot|T09A5.6|cod|T09A5.6|gene|T09A5.6|ann|Mediator of RNA polymerase II transcription subunit 10 (Mediator complex subunit 10) (CeMED10) (CeNUT2). [Source:UniProtKB/Swiss-Prot;Acc:P45966] 522 1 CAGCAACAGCAGCAAAGCCAACAA 24 CAG 2 25 7 30 1 CATTTGATGAAAGAATTCAGTGAAGAAATGCCTGATCTCGTTATGTACTACAGAAGCATCAGAGAAGATCTCGATTTATCATAAATGGTT AGGATGATGGAATTGCACGAAAGAAACGATAGAGAGAAGTTGGCAAGAAAAACTGAAAAAGAGCGTGAAGAGGAGAGGAGAAAACAAGAA --- --- --- --- >prot|Y48E1B.14b|cod|Y48E1B.14b|gene|Y48E1B.14|ann|Y48E1B.14a [Source:RefSeq_peptide;Acc:NP_496844] 468 1 CAACAACAACAACAA 15 CAA 5 100 22 36 5 TATGGAGGGGCGATTAGCAGGGATCGAGCTTTTATTAACGAGATACGACAACTCCCATTCCCCTCTTAAATGAACATGTCCGATCCGAAA AAGATCCACGTGGGCGCCGCCGTGGTTCTTCTCACGGCGATCTTCTACGCGGCCGACTTTGGATTCGTATCGATTCTCGTCGTAATCGGC GO:0005524:ATP binding;GO:0000166:nucleotide binding;GO:0004827:proline-tRNA ligase activity; GO:0006418:tRNA aminoacylation for protein translation;GO:0006412:translation;GO:0006433:prolyl-tRNA aminoacylation; GO:0005737:cytoplasm; --- >prot|F26H11.2a|cod|F26H11.2a|gene|F26H11.2|ann|Nucleosome-remodeling factor subunit NURF301-like. [Source:UniProtKB/Swiss-Prot;Acc:Q6BER5] 5076 2 CAGCAACAGCAGCAG 15 CAG 3 60 3757 3771 74 CGAGCGGAAGCTGAAAAAACTGCGAAACGGAAGTTGGAAGCGACAAGGAAAGCACAGAAAGCCAAAGAAGACGAGGAGCGGCGACGGATT AGATCAGTGGCGCGTATACCAGTTCCAATGCACTCACTTATTCCGTCAGAGAGAAATAACGTGCCATACTTGGGATCGCAACAACAACGA GO:0005524:ATP binding; --- --- --- >prot|F26H11.2a|cod|F26H11.2a|gene|F26H11.2|ann|Nucleosome-remodeling factor subunit NURF301-like. [Source:UniProtKB/Swiss-Prot;Acc:Q6BER5] 5076 2 CAAATGGTGCAGCAACAGCAACAA 24 CAA 2 25 4963 4986 97 TACGTGCTTCAAGGCGGAAACTCCGGTACACCAAATGTAAATCCTCCAAAAGTGTCGTCTCGTGGAGGGCCGCGTGGCGGATTGACTATG CATAACCCGGCTCACTATGACATGCCTGATGACGCGACTGGTTTCGCAGTTTCCACCACAACTGAGCAAGTGCCAGATGAGCAACAA GO:0005524:ATP binding; --- --- --- >prot|C54G6.2|cod|C54G6.2|gene|C54G6.2|ann|The C54G6.2 gene encodes a homolog of human RP2, which when mutated leads to X-linked retinitis pigmentosa 2 (OMIM:312600). [Source: WormBase] 2103 1 CAGCAGCAGCAGCAG 15 CAG 5 100 682 696 32 AACAATTGGAGCCCCAGAGCTCCCGGCTCCACACTGCCCGTTTCCATGGAGACACTCCGATTATTATGGGAGCCACCACTGCTCGCCGAG CCCATTGTTAACCCGATGACCAATATCTATATTTGGGTCCGGACCGCCCGTTCCCTTCAGTTTTTTTATCCGACTATCGATGTGGAGGCC --- GO:0006810:transport; GO:0016020:membrane;GO:0016021:integral to membrane; --- >prot|W03C9.7.1|cod|W03C9.7.1|gene|W03C9.7|ann|mex-1 encodes a CCCH-type zinc-finger protein that is required maternally for segregation of P granules, germ cell formation, and somatic cell differentiation in the early embryo. MEX-1 is expressed cytoplasmically in germ line blastomeres, is a component of P granules, and is required for restricting PIE-1 expression and function to these cells. mex-1 mRNA transcripts are also transiently associated with P granules. [Source: WormBase] 1485 2 CAACATCAGCAGCAGCAGCAGTACCAACAA 30 CAG 5 50 760 789 51 GGCGAGATCTCACCGGCTCGCGACGACGAGATCACCAATCCCGACGAATCATCATCCCAAGTGGAGGATCTGAGTGAGCTTCACCATCGA CGCTATCGTCGGCCACCATTCAACAATTTCCACGATATGTCGGATAGTGGATACAGTGCTCCTCGCCGCCGGCTTCATCATCAATTCGAG --- --- --- --- >prot|W03C9.7.1|cod|W03C9.7.1|gene|W03C9.7|ann|mex-1 encodes a CCCH-type zinc-finger protein that is required maternally for segregation of P granules, germ cell formation, and somatic cell differentiation in the early embryo. MEX-1 is expressed cytoplasmically in germ line blastomeres, is a component of P granules, and is required for restricting PIE-1 expression and function to these cells. mex-1 mRNA transcripts are also transiently associated with P granules. [Source: WormBase] 1485 2 CAGCAGCAGCAGCAGCAGCAGCAG 24 CAG 8 100 895 918 60 CCATTCAACAATTTCCACGATATGTCGGATAGTGGATACAGTGCTCCTCGCCGCCGGCTTCATCATCAATTCGAGCATCTTGGTAGTGAG ACACCAGCTCCGAAGATTGTCTATCCATCGATGCAAGTTGTCAATATTGAAATGGCAACTGGTGACGGACCTAAAAGGTCTGACAATCAT --- --- --- --- >prot|K08F8.6|cod|K08F8.6|gene|K08F8.6|ann|The let-19 gene encodes a protein related to human TRAP240 (thyroid hormone receptor-associated protein 240, OMIM:300182), a transcriptional co-activation complex subunit conserved in yeast, Drosophila, and humans. LET-19 is required for proper asymmetric cell divisions and cell fusions regulated by LIN-44/Wnt and LIN-17/frizzled, as well as for proper development of secondary vulval cell fates as regulated by Notch signaling. [Source: WormBase] 8589 1 CAGCAGCAGCAGCAACAACAAATGCAG 27 CAG 4 44.4444444444444 4255 4281 49 TCACCAAACTTCAATCAACAGTACAATGGAATGGGAAATCAACTAATGAGTCCAATACATCAACACCAATTCCATCAGCAACAAATGGTT ATGCATAGACAACAGATGCAGATGCAAAATCAAAATATGTCCCAACCGTTCCAACCACCAACTGCTCAAATGTTACAAATGCAGCAAAAT GO:0043169:cation binding; GO:0005975:carbohydrate metabolic process; --- --- >prot|F26H11.2c|cod|F26H11.2c|gene|F26H11.2|ann|Nucleosome-remodeling factor subunit NURF301-like. [Source:UniProtKB/Swiss-Prot;Acc:Q6BER5] 6801 2 CAAATGGTGCAGCAACAGCAACAA 24 CAA 2 25 4963 4986 73 TACGTGCTTCAAGGCGGAAACTCCGGTACACCAAATGTAAATCCTCCAAAAGTGTCGTCTCGTGGAGGGCCGCGTGGCGGATTGACTATG CATAACCCGGAACATCGACGACTACTCGCCGGACGACAGAAGCAAAAAGTGACGACGTACAGGGATTTCATGGCGAGCAGAGGATATTTG GO:0005524:ATP binding; --- --- --- >prot|F32A11.3|cod|F32A11.3|gene|F32A11.3|ann|F32A11.3 [Source:RefSeq_peptide;Acc:NP_496792] 1062 1 CAGATCCAGCAGCAGCAGCAG 21 CAG 5 71.4285714285714 379 399 35 CGTGTTAAGTACACCACGACCCAGCAGGCACCTGCGTCTCCAGCTCCGGACTTCACAGAGCAACAGTTGATGGCTCAGCTGCAGGCTCTT CCGGCACCAGATGTTCCAGTCGTCGAGCCAGTTCAACAAGTTCAGCAAAAGCCAAAAGTTGCTCCGAAGATGCTTCACAAGATGTATGAC --- --- --- --- >prot|F59A2.1a|cod|F59A2.1a|gene|F59A2.1|ann|F59A2.1b [Source:RefSeq_peptide;Acc:NP_871701] 2583 1 CAGCAGCTTCAGCAACAACAGCAA 24 CAG 2 25 292 315 11 AATCACGGAAAAGAGCTCGAGAGACTTCATCAAATTATACACACTCTTCTTGCTCGTGATGCGAATCCTCTCGGCTCAATGATTCCTCCA ATGTTGATTCTTCAGCGACAAATGGAGATGGCTCATGTGCAGGCAGCACAAGCTCAAGCTCATGCTCACGCTCAAGCTCAAGCCCAAGCA GO:0000166:nucleotide binding;GO:0017111:nucleoside-triphosphatase activity; GO:0030163:protein catabolic process; GO:0016020:membrane; --- >prot|B0511.12|cod|B0511.12|gene|B0511.12|ann|B0511.12 encodes an ortholog of Drosophila PECANEX, and thus may participate in GLP-1/LIN-12 signalling. [Source: WormBase] 4905 1 CAACAACAACAACAACAACAAGCATCTCAA 30 CAA 7 70 3799 3828 77 TTCACTTTCGAAGGCTTCCGACAATTAGGGCAAAATGTGTGGAATCGTCTCCGGAATCATTTCGGTCCATCTGGAAGTACATCAGCTCAT TCAATAGTTCCAACACCAACTCCCGTTCCTCCTGTAATGCAAATCACGATTCCTTCTGCAACTCCATCTGGAATATCTTCTGCACCTGGT GO:0003677:DNA binding; GO:0006334:nucleosome assembly; GO:0005634:nucleus; --- >prot|C05D11.4|cod|C05D11.4|gene|C05D11.4|ann|let-756 encodes an fibroblast growth factor (FGF)-like ligand that is required for progression through early larval development. LET-756 is expressed from late embryogenesis to adulthood, with a peak of expression in larvae. with EGL-17, LET-756 is redundantly required to activate EGL-15/FGFR, which in turn activates protein degradation in adult muscle cells. homozygotes for partial loss-of-function alleles are small, clear, and scrawny, but viable, while those for a null allele arrest in early larval development. [Source: WormBase] 1278 1 CAACAACAACAGCAGCAACAA 21 CAA 3 42.8571428571429 964 984 75 GAAGATCGATTAAGAAAAGAGGAACAAATTAGAGAAGCCCGTCGCCAAGAGCTCAAAAGTCTTCGTGAAGAAGAACTCCGACGTCGTTAT GCATCTACTCAAACTCGGTACAATCGTCCTCAAAATCCAGCGAATCCTTATCCAACGTATCGACCTCTTCCAACAAGATCAACAGTACAA --- --- --- --- >prot|F40F9.7a|cod|F40F9.7a|gene|F40F9.7|ann|F40F9.7b [Source:RefSeq_peptide;Acc:NP_001023907] 996 1 CAACAGCAGCAACAG 15 CAG 2 40 139 153 14 CCCGTCAATTATGCATCGGCTACTCAAAAAATGTCAACGTTGGCATCCACTTCATCAGCCGGTGCTTCATCATCAACAGGTAGCAGCAAC GCAGCTGCTGTGATCCGAAGACGTCGTTTCAGCACTGCAAAAATTCAGCCAACACGCATAAAGAAGGTTATGCAAAGTGATGAGGATATC --- --- --- --- >prot|Y48E1B.14a.1|cod|Y48E1B.14a.1|gene|Y48E1B.14|ann|Y48E1B.14a [Source:RefSeq_peptide;Acc:NP_496844] 2916 1 CAACAACAACAACAA 15 CAA 5 100 25 39 0 GTCGACCGCCTCCTCCTACAAATTTTCCCAGAACTCGATGAATTCGGCCAGCACCCGCTACAATAGATGATGAACATGTCCGATCCGAAA AAGATCCACGTGGGCGCCGCCGTGGTTCTTCTCACGGCGATCTTCTACGCGGCCGACTTTGGATTCGTATCGATTCTCGTCGTAATCGGC GO:0005524:ATP binding;GO:0000166:nucleotide binding;GO:0004827:proline-tRNA ligase activity; GO:0006418:tRNA aminoacylation for protein translation;GO:0006412:translation;GO:0006433:prolyl-tRNA aminoacylation; GO:0005737:cytoplasm; --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAACAGCAGCAACAGCAA 18 CAG 2 33.3333333333333 808 825 9 ATGAGGCATCAATATCCACCACACAGTCAACAACAGGCACCACCAGGATATTGGGATGGTTATCAGGGTTACGGTGGACCACCACCTTCA GGAGGTGGACCTGTGACGGCGCCTCAATCAATGCAAATGGCACAACAGGAACAATGGGGAAGAGTTGGAACCAATGATTTGATGAACGTC --- --- --- --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAACAGCTTCAACACGTGCAGTGGCAACAGCAGCAACAACAACAACAA 48 CAA 5 31.25 1063 1110 11 AATATGCAACGAAGTGCGTCGGCTGACGCAGAAGTTCAACAGCTGCAACATAAACTTGCTCAGTTCCAAAGTGATCATTATCGGTACAGC GCTGCTGCTGCTGCAGCGGCGGCCGCAGCAGCTGCATCTGCTGGCGGACATCATCAAGGACCACCACCACCAACGTCTTCCCAATCGAAT --- --- --- --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAGCAACAACAGCAG 15 CAA 2 40 1501 1515 16 GCTCCACAGGTTAAGATGGAACCAGAGAAACCATCGCCGTATCAGCAACAGTATAATGGAATGGAGAATGGTTCTGGAAATCCGTATGCT CATCCGATGTATGCACAGTATCAACAGCAGCAGCAGCAGCATGCTCAACATCAGCAGAACATGTCTGGATATCCTCAACAGCAGCAACAA --- --- --- --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAACAGCAGCAACAACCTCAA 21 CAG 2 28.5714285714286 1591 1611 17 CAGCAACAACAGCAGCATCCGATGTATGCACAGTATCAACAGCAGCAGCAGCAGCATGCTCAACATCAGCAGAACATGTCTGGATATCCT CATCCTCACCAGCATCAACAGCCTGCTTCGGTCCCAATGCAACATCATCCTCAGCAACATCCATCCCAACATCAAACCCAACCCAACCAA --- --- --- --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAACAACAGCAGCAG 15 CAG 3 60 1699 1713 19 CAACATCCTCACCAGCATCAACAGCCTGCTTCGGTCCCAATGCAACATCATCCTCAGCAACATCCATCCCAACATCAAACCCAACCCAAC CACCCATCCGGATACGGTATCGGTGTTAGTACGGCGCCGGCTTCAATGGAACCATCACAATCAGTGGATCAATCAGCACCACCGAGTCAA --- --- --- --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAACAACAACAACAGCAACAACAGCAG 27 CAA 4 44.4444444444444 6868 6894 77 GCTGACGTGGAAACTGTGAATGATAGCGATTCTGAAGATAAGAAGGATATGGCAGCTGTTGCAGCAGCTCAAGCTCAATTCCTTCGACTC GCGGCTGCAGTTGCTGCGAGCTCTTCTGCATCCAGGAAGGCGAGTCGGAAACGACCGAATAACGATAATGATGCTAAGATGAGAGCTATG --- --- --- --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAACAACAACAACAGGCTCAG 21 CAA 4 57.1428571428571 7153 7173 80 ATGATGGCTGCCAGTGGAGGGCAGAATATGACAGCTGCACAACAACAAGCATTGAATCAGATGCTCACTATGCTCATTGCCGGTGCAGTT CCGAGCACTTCCAAAGGAGCTTCCAGTAGTCAGTCTTCTGCGCAGGCCAATCAAGCTGCACAGGCGCAAGCCGCTGCAGTTGCTCTTGCA --- --- --- --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAACAGCAACAACAACAAGCTCAACAGGCTCAGCAA 36 CAA 4 33.3333333333333 7528 7563 84 TCGAAACCAGCTCCTCAGAAGGAATCGACATCTTCAGCGACAGCGGCAGCTGCTGCAGCTTCTGCACAAGCGGCAGCGCTTGCTGCTGCT GCAGCTCAGCAGGCTCAATCTGCGAAGACTCAGGAAGAATTGCTGATTCTTCGGCTTCTTGAACTTGCTGGAGTTGGTATGCAAGAGTTG --- --- --- --- >prot|T04D1.4|cod|T04D1.4|gene|T04D1.4|ann|T04D1.4 [Source:RefSeq_peptide;Acc:NP_491426] 8904 9 CAGCAGCAACAACAACAACAGCAG 24 CAA 4 50 8851 8874 99 CTGCTGTTGACTGCATTGATGCAAAATCCGGCGATTCTTCAATCGATGATGCTTTCGGATCCGAGCATTCTAGCGGCGTTAGCTGCTGCT CCGTCAGCGAAGAAGTCCAAACATCCT --- --- --- --- >prot|ZK783.4|cod|ZK783.4|gene|ZK783.4|ann|flt-1 encodes a putative homolog of flectin, an extracellular matrix protein thought to provide a microenvironment of great elasticity. however, FLT-1 protein contains no similarity to other ECM components, instead mostly appearing to be made up of chromatin or DNA-binding domains. FLT-1 also contains a glutamine/asparagine-rich domain, which may mediate epigenetic regulation. [Source: WormBase] 4131 2 CAGCAACAACAGCAACAACAACTTCTACAGCAACAA 36 CAA 3 25 49 84 1 AAATACAACTTTACAAAAAGACTCAGACGCCTTCATCGTTAAATGAGTGATAACTCATCTAATCAGTTTCTACTTCTGCTAGCAGCTGCA CTTGCAAAGATCCAGAAGGCCACTGCATCATCTCCATCGAAATCAACTAATGGAACATCAGCATCAACGTCGGCTGTCCCGTCAACTTCT --- --- --- --- >prot|ZK783.4|cod|ZK783.4|gene|ZK783.4|ann|flt-1 encodes a putative homolog of flectin, an extracellular matrix protein thought to provide a microenvironment of great elasticity. however, FLT-1 protein contains no similarity to other ECM components, instead mostly appearing to be made up of chromatin or DNA-binding domains. FLT-1 also contains a glutamine/asparagine-rich domain, which may mediate epigenetic regulation. [Source: WormBase] 4131 2 CAAATGCAACAAAAACAGCAACAACAACAG 30 CAA 3 30 694 723 16 TCAGCTTCAATTACATCATCTAATAACAATGCAGCGAACAACGCTGCGAGCAATATGATGAACAATGTGATGTGGCAATTGGTGGCAGCA AAGGATACTCAGAAAAAGGCGGATCAAGCGAAAAAAGCGAAAGAGCTTGCCAAACAACAACAGAAAGAGCAAGATGTGAAGAATAAGCAA --- --- --- --- >prot|Y51F10.3|cod|Y51F10.3|gene|Y51F10.3|ann|Y51F10.3 [Source:RefSeq_peptide;Acc:NP_740795] 1014 1 CAACAGCAGCAGCAGCAGCAG 21 CAG 6 85.7142857142857 76 96 7 AAGCAGAATGCCTAGATGAAGATCTCTTCATGTTTAACGGCACTTTTTCTATTTTTGCCACTGCTTCTTGCCCAACAACCACTGAAAACC AAAGTTGACGCAAGTGTGGCGAAACCTGGTCTCCACGACATTCTACTAAAAACAGTGCACGACACGGCGTCCTACTTGGGATTCGGTGTG GO:0005515:protein binding; --- --- --- >prot|F52C9.8g|cod|F52C9.8g|gene|F52C9.8|ann|Putative RNA exonuclease pqe-1 (PolyQ enhancer protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q10124] 2019 1 CAGAATGCACAGCAGCAGCAACAACAA 27 CAG 3 33.3333333333333 97 123 4 AATGGCGGCTATGGATCTGGAAACAGCTTTAATCTTCAAAACTATGCACCAATCGATCCGATGACCGGCATACCCGGGTTCGGGCCATCG GCAAGTGCCCCTGGAACTTCTTCGGGAGGTCCATCACAGGCAGTCAGCGGAGCTTCTTCCGGTGCTTCAATGAAAACAGAGCCTGTCGCC GO:0008270:zinc ion binding; --- --- --- >prot|F44A6.1a|cod|F44A6.1a|gene|F44A6.1|ann|F44A6.1 encodes two isoforms of a nucleobindin homolog that each contain a calcium-binding EF-hand domain and a glutamine/asparagine-rich domain. F44A6.1 is expressed in muscle (pharyngeal, body wall, and vulval), with weak expression in head and tail neurons and in (mainly posterior) intestinal cells. F44A6.1 has no obvious function in vivo, since it has no obvious phenotype when deleted or inactivated by RNAi (whether in a normal genetic background, or in goa-1 and egl-30 mutant backgrounds). [Source: WormBase] 1362 1 CAACAGCAACAACAA 15 CAA 3 60 1246 1260 91 CAGGCTCAGCAACAAGTTCACCCTGCTCAACAGCCAATTCAACCGGTGAATGCAAATCCACCACCTGTTCAAAATGCGCAACCGCCTGTG CCTCCACAGCAACCACCGCAACAACCACCTCAACAAAATTTGCCCCCTGTGCACCATGAACCCATCCAAGATCACACTAAAGATCCAACA --- --- --- --- >prot|F08D12.12.1|cod|F08D12.12.1|gene|F08D12.12|ann|F08D12.12 [Source:RefSeq_peptide;Acc:NP_494365] 1179 1 CAGCAGCAGCAGCAG 15 CAG 5 100 16 30 1 CAGGAGAGAAAGTCGGAATCTACGCCTACATCAAGAATGACCGTCTCAGTGGATCGTCCAACAAAGTATAAATAAATGGCCTTTGGGGAG GAGTCTAGTAAAAAGCCTGAGAGAAGAGCTGGAAGAATGAAAAACTCCGAGGAAGAAAGAGCTCGAAAGGAGCCTGATGGGAAGGAGGAT --- --- --- --- >prot|ZK1098.10a|cod|ZK1098.10a|gene|ZK1098.10|ann|unc-16 encodes a homolog of murine JIP3/JSAP and Drosophila SUNDAY DRIVER that is involved in vesicle transport, and that affects egg laying, locomotion, and defecation and physically interacts with JNK and JNK kinases. UNC-16 is expressed in neurons of the ventral cord, retrovesicular and preanal ganglia, the nerve ring, intestinal cells, seam and hypodermal cells, body wall and head muscle, and pharynx. [Source: WormBase] 3420 1 CAACAACAGCAGCAG 15 CAG 3 60 1336 1350 39 GTTCTTATGGATCGAAATGCATACAAAGAAAAGCTTATGGAACTCGAAGAGTCTATCAAGTGGACTGAAATGCAACGAGCAAAGAAGATG AATGTGAATCAGAAGAAATCTGGCGGAATTTGGGAATTTTTCTCAAGTCTCCTGGGTGATTCAGTGACCCCACCCGCATCGTCGCGGGGA GO:0005524:ATP binding;GO:0004713:protein tyrosine kinase activity;GO:0004674:protein serine/threonine kinase activity; GO:0006468:protein amino acid phosphorylation; --- --- >prot|B0336.6.2|cod|B0336.6.2|gene|B0336.6|ann|B0336.6 encodes an Abl interactor ortholog, with an SH3 domain, required for embryonic development. mammalian Abl interactors are associated with synaptosomes, growth cone particles, and macropinocytic vesicles, and may regulate Rac-dependent cytoskeletal reorganization and Abl kinase activity. B0336.6's orthologs include human SSH3BP1 (ABI1. OMIM:603050, mutated in acute myeloid leukemia), ABI-2 (OMIM:606442), and NESH (OMIM:606363). B0336.6 binds UNC-53 in two-hybrid screens. [Source: WormBase] 1410 1 CAACAACAACAACAACAACAAATGCAACAACAA 33 CAA 7 63.6363636363636 961 993 68 AGTAGTGCTGGAGGTCCAGAATCACCAACATTCCCACTTCCACCACCAGCTATGAATTATACTGGATATGTTGCACCGGGAAGTGTGGTA AATTATGGAACTATTCGAAAATCAACGGTGAACCGACATGATCTTCCACCTCCACCAAATTCTTTGCTCACTGGAATGTCAAGTCGAATG --- GO:0016192:vesicle-mediated transport; --- --- >prot|T05A10.1k|cod|T05A10.1k|gene|T05A10.1|ann|sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain. SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396). SMA-9 proteins are required for growth to normally large body size. [Source: WormBase] 1749 5 CAGCAGCAGCAGGCTTCGCAGCAACAACAGCAAGTGCAGCACGTCCAGCAGCAACAACAGTCGCAGCAGCAACAGCAACAA 81 CAG 4 14.8148148148148 187 267 10 CACAGGTTAAATCAGGTACAACGTGAGCAGCTAAATCATCAACGATTATTACAAGCACAGCTCCAGACTAATGGACCTGGAAGTGTTTCT GTTGCTTCACAACAAAACCAGCCGCAATTGCAAATGAATGCTCAGATACTGCAAGCTTTGTCAACACCACAAGGACAAAATTTAGTTAAC --- --- --- --- >prot|T05A10.1k|cod|T05A10.1k|gene|T05A10.1|ann|sma-9 encodes, by alternative splicing, at least two large (~2000-residue) protein with at least three N-terminal involucrin domains, seven C-terminal zinc-finger domains, and a glutamine/asparagine-rich domain. SMA-9 is orthologous to human HIVEP1 (OMIM:194540), HIVEP2 (OMIM:143054), and HIVEP3 (OMIM:606649), and to Drosophila SCHNURRI (FBgn0003396). SMA-9 proteins are required for growth to normally large body size. [Source: WormBase] 1749 5 CAACAGGCTCAACAGCAACAGCAAGGGCAGTCTCAA 36 CAA 1 8.33333333333333 1216 1251 69 ATGCAAGCCCAGCTTCAACAGCAACTGCTTCTCCAACAGCAACAGGCTCAGGCTCAACAAGCTCAACAAGCTCAGCAAGCACAACTAGCT AATAGAACAGTTTCTCAAGCACTGCAATATATTCAGTCTATGCAACTGCAGCAAAGAGCCGATGGAACCCCAAACGCTATTGTCGAGAAG --- --- --- --- >prot|K07C11.1|cod|K07C11.1|gene|K07C11.1|ann|PAX (Paired box) transcription factor family member (pax-1) [Source:RefSeq_peptide;Acc:NP_505120] 774 1 CAGCAGCAGCAACAA 15 CAG 3 60 628 642 81 ATAAGCAGAATTCTTAGGAATAAAAACGGAGGAAATAGTTCAAGCTCATCAAGCTCTCAACTTCGATACATCAGAGATCAGCTCGCCGAG CATCTACAACAACATCAGTATATGGAATATAACAATAATGAATTAAATCAAATTTCTGGAAATCTTGATTATCAAGTTTCATCTTCAAAT --- --- --- --- >prot|Y53G8AR.9|cod|Y53G8AR.9|gene|Y53G8AR.9|ann|Y53G8AR.9 [Source:RefSeq_peptide;Acc:NP_497690] 948 1 CAGCAGCAGCAACAG 15 CAG 3 60 148 162 15 TCACATCACGACGCGGCGCCCCAACAGCAACAGAACAATATGTCCCACCAACAGCAGCCGCAGCAGCAGCAGCACAATGAGCACAATAAG CGCGATGACGTGTGCCGAGACTTTTTGAAAAACATTTGCAATCGCGGCTCGCGCTGTAAATTTTATCATCCGTCCGAGGCGCCGCCAATC --- --- --- --- >prot|K08A8.3|cod|K08A8.3|gene|K08A8.3|ann|coh-1 encodes a RAD21 homolog that affects embryonic viability and is believed to affect cohesion of sister chromatids in somatic cells. expressed in the distal tip cells of the gonad, embryonic, and somatic cells [Source: WormBase] 1959 1 CAACAGCAGCAACAA 15 CAG 2 40 1447 1461 74 TTGGTAGTTACCAAGCACGACGACGTTGACGAGAAAAACGAGTGGATCAAAAACGCTTTGGGTCTTCGTGAGATTGGAGAAGAAGAGCTG GAAATGGATATGCATGTTCAGGACGATTCATCGTATGTCGACGACTTTGACGAGGTTCCACCACTCGACTTTGATCAACTGGATATGATG --- --- --- --- >prot|K10G6.3|cod|K10G6.3|gene|K10G6.3|ann|sea-2 is an autosomal signal element gene, whose protein product contains four C2H2 zinc finger domains and three involucrin repeats embedded in extensive regions of low-complexity (e.g., glutamine/asparagine-rich) protein sequence. sea-2 has no obvious biological function in mass RNAi assays. [Source: WormBase] 5517 3 CAGCAGCAGCAACAA 15 CAG 3 60 2629 2643 47 GCTCTCCGGGCTCAGCAGCACCAGCAGAAAATGGATCAACAAATTCAGATTCAGTTCCAGCAGCAGCAGCAACAGAGATTCCAACATCAT GCGGGTCGGATCCCACCACGGCCACCCAATCCGATTTTGAATCAAGTTCAGAACCCGCCTCAGCAAGTGCAACACAATCAGCATCAGAAT GO:0005524:ATP binding;GO:0004674:protein serine/threonine kinase activity; GO:0006468:protein amino acid phosphorylation; --- --- >prot|K10G6.3|cod|K10G6.3|gene|K10G6.3|ann|sea-2 is an autosomal signal element gene, whose protein product contains four C2H2 zinc finger domains and three involucrin repeats embedded in extensive regions of low-complexity (e.g., glutamine/asparagine-rich) protein sequence. sea-2 has no obvious biological function in mass RNAi assays. [Source: WormBase] 5517 3 CAGCAGCAGCAACAG 15 CAG 3 60 2965 2979 53 AGATCTTCAGAAGGCCTGGTGGCTGTCACATCGACACCGCTTCCGCCGATACAACTGCCTCAGAGATCTCAGGCGCCAGCACCGTCAAGG CCCCCGGTCGCCTACCAAGTGCAGTTCAATGGTCGACCACTTCCGCCGATGCAGCTCCCGCCGCTTCAGAATCCACACAATCAACAGCAG GO:0005524:ATP binding;GO:0004674:protein serine/threonine kinase activity; GO:0006468:protein amino acid phosphorylation; --- --- >prot|K10G6.3|cod|K10G6.3|gene|K10G6.3|ann|sea-2 is an autosomal signal element gene, whose protein product contains four C2H2 zinc finger domains and three involucrin repeats embedded in extensive regions of low-complexity (e.g., glutamine/asparagine-rich) protein sequence. sea-2 has no obvious biological function in mass RNAi assays. [Source: WormBase] 5517 3 CAGCAGCAGCAACAA 15 CAG 3 60 4420 4434 80 TCGCTAGCATCGCCGGGGGAGCAGTTTGGGTATCAGCAGTATTCACAGCATCCTCAGCAACATCCTCAGCAACATCCTCAGCAGCATCCT GTCTGGAATCCGAATTATGAATTCCAAGGTTACATGCAGCAGCAGCATCCACCGATGCCAGTTTCTCAGCAATTCCAGCAGCCGTTGCTT GO:0005524:ATP binding;GO:0004674:protein serine/threonine kinase activity; GO:0006468:protein amino acid phosphorylation; --- --- >prot|R06C1.6|cod|R06C1.6|gene|R06C1.6|ann|R06C1.6 [Source:RefSeq_peptide;Acc:NP_493030] 1299 1 CAGCAGCAACAACAACATGAGCAACAG 27 CAA 3 33.3333333333333 166 192 12 GGAGCAGAAGCCATGAGTTTTGGAAGAGGAATATCCAACGATCTTCCCACAGCATACGTGACGTCAACACCGCTTCCGTTGGCCAAAGCA CTTCATCATCTCCCAGGCTATCATTCCGCAGGGCAGTCGAGAGTGATGAGTGAAGAGGAAAACGAACGCGAGAAGCACGCAAAAATCTCG GO:0005506:iron ion binding; GO:0009072:aromatic amino acid family metabolic process; --- --- >prot|W02C12.3b|cod|W02C12.3b|gene|W02C12.3|ann|W02C12.3 is orthologous to the human gene TRANSCRIPTION FACTOR BINDING TO IGHM ENHANCER 3 (TFE3. OMIM:314310), which when mutated leads to disease [Source: WormBase] 1500 1 CAACAGCAGCAGCAACCACAACAAGCCCAGCAACAG 36 CAG 3 25 82 117 5 TTTTCGTAAATGATCCGCCAACTAAATTCACCAGGCGGTGGCGGCGGCCTCGGATTGAACAATCCGAGAGCCCAGCAGCCACCGGGTGCT TTCTACGATGACGAGCCATATCAGGCTAACGCGTCGCAGTTTCGATTTGGCGCCGGCAAAAGTATGGAACAACGTCGAGAGACGGGAAAT GO:0008533:astacin activity;GO:0008237:metallopeptidase activity;GO:0008270:zinc ion binding; --- --- --- >prot|T08H4.3|cod|T08H4.3|gene|T08H4.3|ann|ast-1 encodes a novel ETS-box transcription factor. AST-1 is required for the proper navigation of some interneuron axons to their targets, for differentiation of the ventral cord pioneer neuron AVG, and for pharyngeal morphogenesis. AST-1 is transiently expressed in many head neurons late in their differentiation and axon outgrowth, and in a few pharyngeal cells. AST-1 is at first nuclear, but then relocates to spots in cell bodies and even neuronal processes. hypomorphic ast-1 mutants have axons extending laterally, and crossing over from the right axon tract to the left axon bundle. null ast-1(hd92) mutants are inviable, failing to attach a working pharynx to their cuticle during development and then starving as L1 larvae. behaviorally, hypomorphic ast-1 animals are at least superficially normal, indicating that the ventral nerve cord can tolerate at least some miswiring. AST-1 regulates odr-2 expression, while ast-1 expression is itself regulated by lin-11. [Source: WormBase] 1134 1 CAGGAGCAGCAGCAACAGCAGCAGCAGCAA 30 CAG 4 40 121 150 10 CCAACCGTCGCCTCGGCGGATCTTGCCATCGTCGGAGGCAGATCATCGGATGAGGATGTGATCAAGTATTCGGCCATTCAAACCATCAAA TCCAATACTGCTCTTCCGTCCTACAATTTCCCATTTTTCAATGGAATGCAAAACGATTTCCCGCCAAATCGAATGCTCTACAATGACAAC GO:0005515:protein binding; --- --- --- >prot|Y106G6H.2c|cod|Y106G6H.2c|gene|Y106G6H.2|ann|pab-1 encodes a polyadenylate-binding protein (i.e., poly(A)-binding protein, or PAB). while not extensively characterized, PAB-1 has been successfully used as an epitope-tagged transgenic reagent for tissue-specific isolation of mRNAs. [Source: WormBase] 1761 1 CAGCAACAACAGCAGCAA 18 CAA 2 33.3333333333333 1414 1431 80 AATCAAGTCGCTCAAGGAGGCGTCCGCATGCAGGGACCACCACGCACCCAAAATCCTGGAGTCCAACAGCAAAACGTTCCACGTCCACCA AGACCAGCTCCAACCGGACCAAAGGCTCCACCACAGCCATATCAGGCATACCAGCAAAGACCACAAGGAATCGTTATTGGAGGACAAGAG GO:0000287:magnesium ion binding;GO:0003684:damaged DNA binding;GO:0016779:nucleotidyltransferase activity; --- GO:0005622:intracellular; --- >prot|C09E7.2|cod|C09E7.2|gene|C09E7.2|ann|PQN-10 encodes an unfamiliar protein, with limited similarity to F27B3.6, that has a glutamine/asparagine-rich domain. [Source: WormBase] 1227 1 CAACAGCAGCAGCAA 15 CAG 3 60 433 447 35 GGAAGCAATGGAATGTTTGGTCAAAACGCATTTGGTACTGGATTCAACAATAATTTGTTCGGAGCAAGCACGAATGGTCTTCTCGGAGGA CTAACCACCAACGCATTTCAAAATTCGCAGCCAATGAGCTTAAACAACGGAAATACAATGAAAGCGTATGGGAGAAGAAGTACTGCTCAA GO:0008890:glycine C-acetyltransferase activity; --- --- --- >prot|Y43F8C.6|cod|Y43F8C.6|gene|Y43F8C.6|ann|Y43F8C.6 [Source:RefSeq_peptide;Acc:NP_507806] 1269 1 CAACAGCAGCAGCAG 15 CAG 4 80 25 39 2 GCGTCAAGCCTAATTCCAACAAGTTGGCGGAAGAAATCGCCGGAAACTGAATTTGTGAAAAATTGAATGAACTCACGAAATTACGAGAAT GGAGGCCACGTACCGCCTGTGGCAAGTAATACGGTCACAATTGGAACATCTGCCAATTCACAGGTCCGAATTGGCCCGTCAACCCAAATC --- --- --- --- >prot|Y47D3A.6a|cod|Y47D3A.6a|gene|Y47D3A.6|ann|tra-1 encodes Zn2+-finger-containing proteins that are the sole C. elegans members of the GLI transcription factor family. during development, tra-1 functions cell autonomously as the terminal regulator of the sex determination pathway and positively regulates all aspects of hermaphrodite somatic sexual differentiation. in addition, tra-1 activity is required for proper development of the male somatic gonad and for sustained spermatogenesis in both sexes. in regulating sex-specific development, TRA-1 functions, in part, by repressing transcription of mab-3 and egl-1 in the intestine and HSN neurons, respectively. TRA-1 is expressed in hermaphrodites and males and localizes to both the nucleus and cytoplasm of many different cell types. expression of C-terminally truncated TRA-1 isoforms is much higher in hermaphrodites than males, due to sex-specific proteolysis that results in the presence of feminizing TRA-1 isoforms in hermaphrodites. [Source: WormBase] 3330 1 CAGCAGCAGCAGCAGCAG 18 CAG 6 100 1792 1809 53 ACAGCTCCAGCTCCACTAGTGCCTGCCCCAGTTCCAGCATCTCCAGTATTCGATGAGCTCCGCGAGCAAATGCGTGAAGTAGAGCCCCTG GAGCCCATGGATCAAGATCTCCAAGATATTCGAGTTGATGGTGACTCTGACGATGAAGATGAAGAAGAACCAAGAACTCCATCCGGAGCA GO:0005515:protein binding;GO:0008270:zinc ion binding; --- --- --- >prot|Y39A1B.3|cod|Y39A1B.3|gene|Y39A1B.3|ann|dpy-28 encodes a non-SMC condensin subunit homolog, similar to XCAP-D2 in Xenopus, Cnd1 in S. pombe, and Ycs4p in S. cerevisiae, that is required for negative, chromosome-wide regulation of X-chromosomal genes in XX but not XO animals (dosage compensation), and for some undetermined aspect of body morphogenesis. DPY-28 is part of a multiprotein 'dosage compensation' complex with DPY-26, DPY-27 and MIX-1. [Source: WormBase] 4500 1 CAGCAACAGCAGCAGCAG 18 CAG 4 66.6666666666667 85 102 1 GATTAAATGCCGAGAAAACAACGCGTTGTCACTACACCGTCACCACCGACTTCAGATGAAGATGAGGATATGGATTTTGGCTCGACGAGC CCGACACGGAATAATGATGGATTGAGTGGCTTCAAAAGTATCACGGAAATCATCGCCGAAGCTGACAATAATATTCCATCCGAACAAATC --- --- --- --- >prot|K03H1.5|cod|K03H1.5|gene|K03H1.5|ann|Uncharacterized protein K03H1.5 precursor. [Source:UniProtKB/Swiss-Prot;Acc:P34501] 4158 1 CAACTTTTACAACAACAGCAACAA 24 CAA 2 25 832 855 20 GCACAATCGGCTGCAAATCAACAGTTTTCAAATCCCAGCCAATATTCTCAGAATTTGAATGCATATTCACAAAATCAACAATACAACACA ATTTATGGGAAAAGGAAGAAAAGGCAGATGCCTGGAAGAGTATCTCAACCGGGAATGGTGGTTGATCCATGGCTTTTGGATAATATTACA --- --- --- --- >prot|Y40B1A.4|cod|Y40B1A.4|gene|Y40B1A.4|ann|Specificity Protein) Transcription Factor family member (sptf-3) [Source:RefSeq_peptide;Acc:NP_493353] 1239 5 CAGCAACAGCAACCTCACCAACAAATGCAACAGCAACAGCAGCAACAG 48 CAA 2 12.5 16 63 1 TTGACAAAACACGAACGAACACATCAATCGAATCGAATTAATAATATTAATCAACAAACTCTACGACTTTCATAGATGTCAAAATCGGGT GGAAAAATGATGGTTGTACATCATCAAAGAACAACAACACCTGATGGATCACAAGTATATCTACTACAACCGAGTCAAAGTCATCCACAG --- --- --- --- >prot|Y40B1A.4|cod|Y40B1A.4|gene|Y40B1A.4|ann|Specificity Protein) Transcription Factor family member (sptf-3) [Source:RefSeq_peptide;Acc:NP_493353] 1239 5 CAACAACAACAACAACAA 18 CAA 6 100 238 255 19 CCACAGCAGAGACAGGTGCAATTCATTCCGATTCAAGTGGCACAGGGTGAGAAGAAGCCTCAAACAGTTATGATGAATCAAATGATGGGA CCATCATCATCGAATCAACAATCACAACAACAGGTTCAACAGCAGCAGCAGCAAGTTCATCAGGTGCAACAAGTACAGCAACACCAAATG --- --- --- --- >prot|Y40B1A.4|cod|Y40B1A.4|gene|Y40B1A.4|ann|Specificity Protein) Transcription Factor family member (sptf-3) [Source:RefSeq_peptide;Acc:NP_493353] 1239 5 CAACAATCACAACAACAGGTTCAACAGCAGCAGCAGCAA 39 CAG 4 30.7692307692308 271 309 22 CAAGTGGCACAGGGTGAGAAGAAGCCTCAAACAGTTATGATGAATCAAATGATGGGACAACAACAACAACAACAACCATCATCATCGAAT GTTCATCAGGTGCAACAAGTACAGCAACACCAAATGCAGCAACAAAATCAAACAGTCCAACAACAACATTTAATGATGGAAACAATTGAT --- --- --- --- >prot|Y40B1A.4|cod|Y40B1A.4|gene|Y40B1A.4|ann|Specificity Protein) Transcription Factor family member (sptf-3) [Source:RefSeq_peptide;Acc:NP_493353] 1239 5 CAACAACAACAGCAACAACAGCAGCAGCAGCAACAA 36 CAG 4 33.3333333333333 442 477 35 CAAAATCAAACAGTCCAACAACAACATTTAATGATGGAAACAATTGATCAAGTTGGAAGTGGAATAATTGGAAATTCAAATGGAAATAAT AGAAGAGATCCAATTCCAATTGCTCCGGCTGGAATGGTCAGTGGACAGAGAATGCAGCAACAACAACAACAACCGCAACAGCAACAGCAG --- --- --- --- >prot|Y40B1A.4|cod|Y40B1A.4|gene|Y40B1A.4|ann|Specificity Protein) Transcription Factor family member (sptf-3) [Source:RefSeq_peptide;Acc:NP_493353] 1239 5 CAGAGAATGCAGCAACAACAACAACAACCGCAACAGCAACAGCAG 45 CAA 5 33.3333333333333 523 567 42 GGAAATAATCAACAACAACAGCAACAACAGCAGCAGCAGCAACAAAGAAGAGATCCAATTCCAATTGCTCCGGCTGGAATGGTCAGTGGA CATAATAATAATAATACAGGAGCATCTACTTCTAATGGAGGAGTTAATGCTGCTCCTGTAATGCCTGTTATGGGTGGACAACAGAGAATT --- --- --- --- >prot|C24H11.7|cod|C24H11.7|gene|C24H11.7|ann|GBF1(Golgi-specific Brefeldin-A-resistant Factor 1) homolog family member (gbf-1) [Source:RefSeq_peptide;Acc:NP_499522] 5928 2 CAACAACAGCAGCAACAGCAGCAACAA 27 CAA 2 22.2222222222222 5527 5553 93 CAACATTCGGAGCACCAACAATATGAGCAATATCGACAGCAGCAGGCAGCGGCTGCACAGCAATATCAGCAGTATAATCAGAACTATCCC TATGCATATTCACCAGAACACGCGGCATACTATCAGCAACAATATGCACACCAACAACAGCAATATGCAGAGCATTATGCCAATCAATAT GO:0016855:racemase and epimerase activity, acting on amino acids and derivatives; GO:0007186:G-protein coupled receptor protein signaling pathway;GO:0008152:metabolic process; GO:0016021:integral to membrane; --- >prot|C24H11.7|cod|C24H11.7|gene|C24H11.7|ann|GBF1(Golgi-specific Brefeldin-A-resistant Factor 1) homolog family member (gbf-1) [Source:RefSeq_peptide;Acc:NP_499522] 5928 2 CAATATCAGCACTATCAACAGCAGCAACAGCAACAACAGCAG 42 CAG 2 14.2857142857143 5638 5679 95 CAACAATATGCATATTCACCAGAACACGCGGCATACTATCAGCAACAATATGCACACCAACAACAGCAATATGCAGAGCATTATGCCAAT CACCCAGTAAATCCAACGAGTCCCAGTGTTCACGGACAGTATTCGGTGGCGAATCCTCTTCCACTGCCGGCTCATCCAGCTTATCATCCG GO:0016855:racemase and epimerase activity, acting on amino acids and derivatives; GO:0007186:G-protein coupled receptor protein signaling pathway;GO:0008152:metabolic process; GO:0016021:integral to membrane; --- >prot|M110.5b|cod|M110.5b|gene|M110.5|ann|dab-1 encodes an ortholog of the cytoplasmic adaptor protein DISABLED, required for normal molting and meiotic arrest. DAB-1 is also required for EGL-17 secretion from vulval cells, and thus indirectly for normal sex myoblast (SM) migration and egg-laying. DAB-1 contains a conserved PTB domain and signals that confer localization to Golgi-proximal vesicles, and DAB-1 localizes to vesicular structures in vivo. dab-1 is expressed in ventral precursor cells, and DAB-1 prevents EGL-17 protein accumulation in them. dab-1 is also expressed in other cells (anchor cell, sheath cells, etc.) but has no obvious function in them. DAB-1 binds the cytoplasmic domains of either LRP-1 or LRP-2 in yeast two-hybrid experiments. dab-1(gk291) and dab-1(RNAi) animals have similar defects in molting, EGL-17 secretion from VPCs, SM migration, and egg-laying. dab-1(RNAi) does not enhance the SM phenotypes of lrp-1(RNAi) or lrp-2(RNAi), suggesting that these genes act in concert to promote normal EGL-17 secretion and SM migration. in vitro, DAB-1 binds to the ear domains of APT-4 (strongly) and of APT-1 and APT-9 (weakly). genetically, dab-1(RNAi) functions as part of the vab-1 pathway in oocytes inhibiting meiotic maturation, and DAB-1 is found in oocyte cytoplasm. [Source: WormBase] 1479 1 CAACAACAACAGCAGCAACAA 21 CAA 3 42.8571428571429 913 933 61 CAACAAATGCAGATGCCAATGGTTCAAATTCCTCAACAATCTCATCAGAATTGGCCAACATCCGGAGCTGGATCATTTGACGCTTGGGGA ATGCACCATGCTCATAGTACACCTGCTTTCGGAACAAACGGATTCTCGGATACTAATCCATTTGCGTCGGCTTTCAATACTCAAGCTCGC --- --- --- --- >prot|Y43H11AL.3|cod|Y43H11AL.3|gene|Y43H11AL.3|ann|pqn-85 encodes an ortholog of budding yeast Scc2p, Drosophila NIPPED-B, and human NIPBL (OMIM:608667, mutated in Cornelia de Lange syndrome) that is required for resistance to double-stranded DNA breakage. PQN-85 is also required, with MAU-2 and SCC-3, for normal chromosome segregation and embryonic viability. pqn-85(RNAi) induces hypersensitivity to double-stranded breaks in DNA (manifested by abnormal sterility induced by ionizing radiation, cisplatin, or camptothecin). pqn-85(RNAi) of early embryos produces lagging of anaphase chromosomes and 100% embryonic lethality. pqn-85(RNAi) is phenotypically enhanced by joint RNAi with mau-2, and joint pqn-85/scc-3(RNAi) grossly deranges chromosomal segregation in early embryos. by orthology with NIPPED-B, PQN-85 might also enable regulatory interactions between promoters and distant enhancers by antagonizing SCC-3. [Source: WormBase] 6612 4 CAAGCTCAACAGCAACAGCAGCAGCAG 27 CAG 4 44.4444444444444 217 243 3 GCTACCGGCCAGTACAATCCGATGTTGTTACAGCAGCAATATTTGAATTTCGGATTTGGAATGAATTATAATAATCAGCTTTTCGACTTT TACCTGATGCAACAACAGCAGCAGCAACAACAGCTTCATCACCAGCAACAGCAGCAACATCAGAATATCGCTCAGCCGCAAGCCCAACAT --- --- --- --- >prot|Y43H11AL.3|cod|Y43H11AL.3|gene|Y43H11AL.3|ann|pqn-85 encodes an ortholog of budding yeast Scc2p, Drosophila NIPPED-B, and human NIPBL (OMIM:608667, mutated in Cornelia de Lange syndrome) that is required for resistance to double-stranded DNA breakage. PQN-85 is also required, with MAU-2 and SCC-3, for normal chromosome segregation and embryonic viability. pqn-85(RNAi) induces hypersensitivity to double-stranded breaks in DNA (manifested by abnormal sterility induced by ionizing radiation, cisplatin, or camptothecin). pqn-85(RNAi) of early embryos produces lagging of anaphase chromosomes and 100% embryonic lethality. pqn-85(RNAi) is phenotypically enhanced by joint RNAi with mau-2, and joint pqn-85/scc-3(RNAi) grossly deranges chromosomal segregation in early embryos. by orthology with NIPPED-B, PQN-85 might also enable regulatory interactions between promoters and distant enhancers by antagonizing SCC-3. [Source: WormBase] 6612 4 CAAGCTCAACAGCAACAGCAGCAGCAGTACCTGATGCAACAACAGCAGCAGCAACAACAG 60 CAG 4 20 217 276 3 GCTACCGGCCAGTACAATCCGATGTTGTTACAGCAGCAATATTTGAATTTCGGATTTGGAATGAATTATAATAATCAGCTTTTCGACTTT CTTCATCACCAGCAACAGCAGCAACATCAGAATATCGCTCAGCCGCAAGCCCAACATCATCAAATGAACATGTTCACACAACATCAGATG --- --- --- --- >prot|Y43H11AL.3|cod|Y43H11AL.3|gene|Y43H11AL.3|ann|pqn-85 encodes an ortholog of budding yeast Scc2p, Drosophila NIPPED-B, and human NIPBL (OMIM:608667, mutated in Cornelia de Lange syndrome) that is required for resistance to double-stranded DNA breakage. PQN-85 is also required, with MAU-2 and SCC-3, for normal chromosome segregation and embryonic viability. pqn-85(RNAi) induces hypersensitivity to double-stranded breaks in DNA (manifested by abnormal sterility induced by ionizing radiation, cisplatin, or camptothecin). pqn-85(RNAi) of early embryos produces lagging of anaphase chromosomes and 100% embryonic lethality. pqn-85(RNAi) is phenotypically enhanced by joint RNAi with mau-2, and joint pqn-85/scc-3(RNAi) grossly deranges chromosomal segregation in early embryos. by orthology with NIPPED-B, PQN-85 might also enable regulatory interactions between promoters and distant enhancers by antagonizing SCC-3. [Source: WormBase] 6612 4 CAGCAGCAACAACAACAGCAGCAGCAACAGCCAGTTCAGCAGATTCAAAGGCAACAG 57 CAA 3 15.7894736842105 379 435 5 CAACAGCAGCAACATCAGAATATCGCTCAGCCGCAAGCCCAACATCATCAAATGAACATGTTCACACAACATCAGATGCTTCAATTGATG CCAATCGCCCAACCAATACCACAACACACAATTCCACCGTCAACCTCGAATCAATTTCAACAGCAAATTCAGTCGGCGGCTTCATCGATT --- --- --- --- >prot|Y43H11AL.3|cod|Y43H11AL.3|gene|Y43H11AL.3|ann|pqn-85 encodes an ortholog of budding yeast Scc2p, Drosophila NIPPED-B, and human NIPBL (OMIM:608667, mutated in Cornelia de Lange syndrome) that is required for resistance to double-stranded DNA breakage. PQN-85 is also required, with MAU-2 and SCC-3, for normal chromosome segregation and embryonic viability. pqn-85(RNAi) induces hypersensitivity to double-stranded breaks in DNA (manifested by abnormal sterility induced by ionizing radiation, cisplatin, or camptothecin). pqn-85(RNAi) of early embryos produces lagging of anaphase chromosomes and 100% embryonic lethality. pqn-85(RNAi) is phenotypically enhanced by joint RNAi with mau-2, and joint pqn-85/scc-3(RNAi) grossly deranges chromosomal segregation in early embryos. by orthology with NIPPED-B, PQN-85 might also enable regulatory interactions between promoters and distant enhancers by antagonizing SCC-3. [Source: WormBase] 6612 4 CAACAACAGCAACAA 15 CAA 2 40 5323 5337 80 GGTCATTTCTGTGCTCAACACTCGACATATCTGACAAAACGGCAACTCACGAACACCTATCTGGAAATCTTGAACGCCGCCAACTCACCA CGAATTCTGGTGCTCCAAAATTTGGAAATGTTCTTGCAATGCGAAGAGCAAAAGCTCGCGGCGAGTCACGATAAATGGGATGAGAACAAG --- --- --- --- >prot|Y67H2A.10|cod|Y67H2A.10|gene|Y67H2A.10|ann|Y67H2A.10 encodes a divergent ortholog of S. cerevisiae SFP1p. in yeast, and probably other eukaryotes, SFP1p is a stress-modulated transcription factor. Y67H2A.10's orthology is invisible in its primary sequence alone, but is detectable by examining the Brugia malayi ortholog of SFP1p, 14538.m00477. [Source: WormBase] 1827 3 CAACAGCAACAACAACAACAACAACAACAAGGAATGCAAATGCAACAGGCACAA 54 CAA 8 44.4444444444444 1255 1308 68 GTATTACAAATGCAAATGCAACATCAGAAGAGGATGAAGCAAATGCAAGAGCAACAAGCAGCTCAACAGGCTGCAGCTGCAGCTGCTGCT TTCTCGTCATCTCCAATAAATCAGATGGGACAACAGGGACAACAGCAGCAACAAATGGGACCACTACCATCATTGCAACATCCACAACAA --- --- --- --- >prot|Y67H2A.10|cod|Y67H2A.10|gene|Y67H2A.10|ann|Y67H2A.10 encodes a divergent ortholog of S. cerevisiae SFP1p. in yeast, and probably other eukaryotes, SFP1p is a stress-modulated transcription factor. Y67H2A.10's orthology is invisible in its primary sequence alone, but is detectable by examining the Brugia malayi ortholog of SFP1p, 14538.m00477. [Source: WormBase] 1827 3 CAACAGGGACAACAGCAGCAACAA 24 CAG 2 25 1339 1362 73 GCTGCTCAACAGCAACAACAACAACAACAACAACAAGGAATGCAAATGCAACAGGCACAATTCTCGTCATCTCCAATAAATCAGATGGGA ATGGGACCACTACCATCATTGCAACATCCACAACAACAACAGCAGCAACAGCAGTATCATCAGATGCCTCCCCAACCTCAACACAGTCCA --- --- --- --- >prot|Y67H2A.10|cod|Y67H2A.10|gene|Y67H2A.10|ann|Y67H2A.10 encodes a divergent ortholog of S. cerevisiae SFP1p. in yeast, and probably other eukaryotes, SFP1p is a stress-modulated transcription factor. Y67H2A.10's orthology is invisible in its primary sequence alone, but is detectable by examining the Brugia malayi ortholog of SFP1p, 14538.m00477. [Source: WormBase] 1827 3 CAGCAACAACAACAACAACAGCAATATCAGCAGCAACATCAACAATCACCACAA 54 CAA 5 27.7777777777778 1510 1563 82 CATCAGATGCCTCCCCAACCTCAACACAGTCCATATCCTCAACAACAGCAAATGCATCATCAAATGGTTCAACATAGTCCGCATCATTAC TTTCCATCTTATCAGCAGTCTCCACAGCAACAACAGGCTCCACCGCCACAACGATCTCCGATTCCACTTTCACAGTCACTTCCTCCTCTC --- --- --- --- >prot|F44B9.6|cod|F44B9.6|gene|F44B9.6|ann|Protein lin-36 (Abnormal cell lineage protein 36). [Source:UniProtKB/Swiss-Prot;Acc:P34427] 2889 1 CAACAACAACAACAACAACAACAACAGCAGCAAGAACAATTTCCAGGACAA 51 CAA 8 47.0588235294118 2815 2865 97 TTTGGCGAAAGGACTGAAGATTATCAAATTTTCTACTCTAACGATGGAGCACAAGTGCTCACCAAAAAAGATCCAAAATGGCGTGAACTT GGATCATCGGATTCTCAACAA --- --- --- --- >prot|F43B10.2b|cod|F43B10.2b|gene|F43B10.2|ann|Temporarily Assigned Gene name family member (tag-343) [Source:RefSeq_peptide;Acc:NP_001041251] 2325 1 CAACAACAACAGCAA 15 CAA 3 60 1801 1815 77 TCTTCTCCGATACTAGTACGCGTTCAACTTTCGAGCAAATCCCCAGACTCTGTCCGACGTCAAGTTCAACCGCAGCCACAGCCGCAGCCA TACGAAGCTTATGGAGAAGCTGACTATGTTTCCAGAAATTTACCATTGGGAGTAACCGAGGAAACAACGACAACTACAACTACAACTCGT --- --- --- --- >prot|C17D12.2|cod|C17D12.2|gene|C17D12.2|ann|unc-75 encodes an RNA-binding protein with two N-terminal RNA recognition motifs (RRMs), a glutamine/asparagine-rich linker domain, and a third C-terminal RRM. UNC-75 is orthologous to mammalian CELF/BrunoL proteins that control pre-mRNA splicing. unc-75 is expressed in all neurons and in neurosecretory gland cells, and is required for normal modulation of GABA- and acetylcholine-mediated neurotransmission. UNC-75 protein is found with other RRM proteins in dynamic nuclear speckles, consistent with a role in alternative mRNA splicing. unc-75 mutations can be rescued in vivo by a human unc-75 transgene, but not by exc-7 or W02D3.11, indicating that UNC-75 acts on evolutionarily conserved but highly specific pre-mRNA substrates. both UNC-75 and EXC-7 are required in parallel for normal cholinergic neurotransmission. [Source: WormBase] 1545 1 CAACAAACTCAACAGCAACAACAACAGCAACAACAA 36 CAA 3 25 877 912 57 TTACAGCAGCAGACTACGGATCCCCTCCACGTTCTGCAACTTCAGGCTGCCGCCGCAGCAGCCCAGGCAGCAGCAAACCCAGTTTTATCC CTGGCCGCACAGCTTCAACTTCAATCCGCAGCAGCTCAGAATCCACATTACGCCCTAGCAGCTCAAGCTCTGGCTCAACAACAGGCTGCT --- --- --- --- >prot|F52G2.1a|cod|F52G2.1a|gene|F52G2.1|ann|dcap-2 encodes an mRNA decapping enzyme that is a member of the NUDIX hydrolase (NUcleoside Diphosphate linked to some moiety X) family of enzymes. dcap-2 exhibits sequence- and context-dependent hydrolysis of mRNA caps in vitro, but RNAi experiments indicate that this activity is not essential for embryonic development. DCAP-2 localizes to cytoplasmic mRNA processing bodies and to P granules throughout embryonic development. [Source: WormBase] 2313 1 CAACAGAATTATCAACAGCAGCAGCAGCAA 30 CAG 4 40 352 381 15 CAGGCTGAAAATGCTCGGATCTCGCAGACGAAGCGACCCCGGCAGGTTTCTACGTCGAAGGGATCTTCCAGGAATACGACGGCACCGGAA TATAAAGGCCCACGGATTCCGACAGATATACTTGATGAATTGGAATTTAGATTTATTAGTAATATGGTTGAGTGTGAGATCAATGATAAC GO:0008289:lipid binding;GO:0004792:thiosulfate sulfurtransferase activity; GO:0006810:transport;GO:0008272:sulfate transport; --- --- >prot|Y46G5A.1a|cod|Y46G5A.1a|gene|Y46G5A.1|ann|Y46G5A.1a [Source:RefSeq_peptide;Acc:NP_001022434] 3258 1 CAGCAACAACAGCAACAGCAGCAGCAGGCTCAA 33 CAG 4 36.3636363636364 10 42 0 TCGACGGCTACTTCGAGAATCACGCATTCTGGAAATCACATCACCAGAATCGATTTGGACGGTGACGTGTCGGTTATCTGAATGAATGAT CGGGAAAGAGCCGGCACGGTGTATTATGATGCTCAACAAAATTTCGGGACCCCGCCAAAATCGTCTGATCATCAGAAGAATAATATGAGT --- GO:0006412:translation; GO:0005622:intracellular;GO:0005840:ribosome; --- >prot|F19B2.6|cod|F19B2.6|gene|F19B2.6|ann|F19B2.6 [Source:RefSeq_peptide;Acc:NP_507885] 2424 1 CAACAGCAGCAGCAGCCGAAGCAA 24 CAG 4 50 202 225 8 AATCAACAGATCCAAGGAATTGAACAAACCGGAGAGCCTAATGGGGACAACCAACCGCCGCAATTGGTTATAGATCAACTGAGTTATGAC AATTGTTTCGATACACATGGAAATATGGATGATAACAGAGGTCTGTACAATCTCCCACAAGGAGCAGAAAATGGATCCGGACACCTTGTC --- --- --- --- >prot|F02E9.4a|cod|F02E9.4a|gene|F02E9.4|ann|pqn-28 encodes an ortholog of the SIN3 family of histone deacetylase subunits, which also has a glutamine/asparagine-rich domain, possibly involved in epigenetic regulation. pqn-28 has no obvious phenotype in mass RNAi screens. on the basis of its homology, PQN-28, when activated by promoter-specific transcription factors, is expected to work in conjunction with other histone deacetylase components to induce chromatin silencing. PQN-28 may also silence genes by colocating to them with the O-GlcNAc transferase homolog OGT-1. [Source: WormBase] 4518 1 CAACAATCACAACATCAACAACAGCATCAGAATCAACAACAACAACAA 48 CAA 5 31.25 103 150 2 CCACCTGGAGGCGGCGGTGGCAACAATGGAGGAGATCAATCTCAACAACAACCTACAAATAATGCGACGTTGTTTTTATTACAAATGATT CTGGAACTTCAAATACGTGATCAAGAGCGTATTTTGATAGAACAACAAAGAATGCAACATCAACAACAACAAAATCAACTTCTTCAAGGA --- --- --- --- >prot|F59B10.1|cod|F59B10.1|gene|F59B10.1|ann|pqn-47 encodes a protein with a glutamine/asparagine-rich domain, homologous to human C11orf9 and Drosophila CG3328, that is required for locomotion, vulval development, full body size, cuticular integrity, and general health in mass RNAi assays. pqn-47(cxP5915) homozygotes are sluggish. [Source: WormBase] 2796 1 CAACAGCAACAGCAACAA 18 CAA 2 33.3333333333333 157 174 5 CAGTACTTAACTCAAGATACTGACGAAGACGATGGCTCAATGGTGTCCCCTACGTCTTCAGCAGATAGCATGCATCAAAATCTAGGAGTT ATGCTGCAAGCACAGCAACGACAAAACCAAAATGGCATTTTTCAGCCCCGTCGATTCCCTGAATCTCCAGCAATGACGGATCCTTGCGGA --- --- --- --- >prot|Y92H12A.5|cod|Y92H12A.5|gene|Y92H12A.5|ann|Y92H12A.5 [Source:RefSeq_peptide;Acc:NP_490861] 4128 1 CAGCAGCAGCAGCAGAAGCAGCAA 24 CAG 5 62.5 727 750 17 CTCCTGACCTCTACTGACGCGAAACTCATCAAAAGTCGACTTGTTCCGATGCTTCAGAAGTATCATCTGCCGGGGAGTAATAAGGAAAAG AAGCCCCAAGAATCGGATACAGCTGTGAAGTTTCTGAATCAGTTGCTGATTCAGTTGAACTCTCAGGATCCGCCAAGTGATCTACAGTCA GO:0030528:transcription regulator activity; GO:0045449:regulation of transcription; --- --- >prot|F48C1.4|cod|F48C1.4|gene|F48C1.4|ann|F48C1.4 [Source:RefSeq_peptide;Acc:NP_491563] 315 1 CAGCAACAGCAACAACAACCGCAGCAGCAACAG 33 CAA 3 27.2727272727273 103 135 33 GACAATGCAGTTGGAACGGAGACAAATGAAGATAAGCCAACTACATCAAATGCAGTCACCGCAGAAAATCCGTCGAGAGGTGATGAGTCG AAAAGGGTAAAACCAGGACATCATCACTTCCTTCGTGTTCTTTTCTGCAACAAAATCCGAAAATCACTCATTCCTCTATGTCTCTTCATC --- --- --- --- >prot|C30A5.3.1|cod|C30A5.3.1|gene|C30A5.3|ann|Uncharacterized protein C30A5.3. [Source:UniProtKB/Swiss-Prot;Acc:P34349] 672 1 CAGCAGCAACAACAACAA 18 CAA 4 66.6666666666667 640 657 95 GAAACTCATCTCTGCAAGCGATTCACCACATACGTGTCGAAGTACAATCTGATGCAACAAGAGCATCTTATTGTTCCCATTCTTCCAAAT ACAACGGTTCAA --- --- GO:0016020:membrane; --- >prot|T01D1.2b|cod|T01D1.2b|gene|T01D1.2|ann|etr-1 encodes a muscle-specific ELAV-type RNA-binding protein, whose homologs include Drosophila ELAV and human CUG-BINDING PROTEIN (CUGBP1. OMIM:601074). etr-1 function is required for embryonic muscle development, which suggests that ETR-1's homology to CUG-BP (implicated in myotonic dystrophy) might reflect conserved roles in development. [Source: WormBase] 1059 1 CAGCAGCATCAGCAGCAGTTATCACAGCAACAACAACAACAACAACATCCGCAGCAACAA 60 CAA 6 30 349 408 33 TCATCGGAAAAGCCACGCCACCAAGCGTTGATGACGTCACCGGCACCGACTGCCACGTCATCAACCTCATCGTCGGCTTCACATCATCAC GGTTTAGGTAACCCATTGCTTGGAAATCCAGCTATGGCTGCTCAAAATCAATTCGACGCTATCACAATGGCACAGATTGCTCATCAACAG GO:0004713:protein tyrosine kinase activity;GO:0005524:ATP binding;GO:0004674:protein serine/threonine kinase activity; GO:0007049:cell cycle;GO:0009790:embryo development;GO:0006468:protein amino acid phosphorylation; GO:0005634:nucleus; --- >prot|Y61A9LA.3c|cod|Y61A9LA.3c|gene|Y61A9LA.3|ann|Y61A9LA.3b [Source:RefSeq_peptide;Acc:NP_504240] 2181 1 CAACATCAGCAGCAGCAGCAGCAG 24 CAG 6 75 1798 1821 82 TCTCTACTAGATTCGGTTACGATGGGGATGAAGGTGGCGGCGGTGGCACAGATGTCTCAGGCTCAGAATCCGATTCAAGGAGGACTGTTT CCGATGATGAGTGGTGGTGGTGGATTCGTTTCCGGGGTTCAGATTCATCATCAGGCATTCCCACAGCCACAACAGTTAAACACGACTCCT --- --- --- --- >prot|Y53C10A.12.1|cod|Y53C10A.12.1|gene|Y53C10A.12|ann|hsf-1 encodes the C. elegans heat-shock transcription factor ortholog. HSF-1 functions as a transcriptional regulator of stress-induced gene expression whose activity is required for heat-shock and proteotoxicity response, larval development, innate immunity, and regulation of adult lifespan. [Source: WormBase] 2016 1 CAAATACAACAAAACCAGCAACAACAGCAACAA 33 CAA 2 18.1818181818182 19 51 1 GCCGACGAGGAAATCTTCCCACATTCACCGGCTCTTCGTACTCCAAGTCCATCGGATCCTAATTTGGTTTAAATGCAGCCAACAGGGAAT CTGATAATGCGTGTTCCGAAACAAGAAGTTTCAGTTTCTGGAGCAGCACGTCGTTATGTTCAACAGGCTCCACCGAATCGACCACCACGG --- --- --- --- >prot|C04A2.3a|cod|C04A2.3a|gene|C04A2.3|ann|egl-27 encodes a homolog of human MTA1, part of an ATP-dependent complex with nucleosome remodelling and histone deacetylation activities that may promote tumor metastasis. in conjunction with its paralog egr-1, egl-27 is required for proper organization in all parts of the embryo, and for the embryonic expression of hlh-8. [Source: WormBase] 3390 3 CAACAGCAACAGCAA 15 CAA 1 20 2707 2721 79 CAAATGGCTCTTCAACAACAACTTGAAGCTCATCAAGTTCAGTTTCAGCTTATGATGGCTCATCAACATCAACAAAAAATGATAGCTGAA AGACATGCTGCAGCGCAGCAATTGCGAGAACGGGAGCAACGTGAACAACGTGAACGAGAAAGAGAACGACAACATCAACAACAGGCTCAA GO:0004767:sphingomyelin phosphodiesterase activity; --- GO:0005576:extracellular region; --- >prot|D1007.13a|cod|D1007.13a|gene|D1007.13|ann|D1007.13b [Source:RefSeq_peptide;Acc:NP_001076600] 429 1 CAACAAGCATTCCAACAACAGCAACAA 27 CAA 2 22.2222222222222 220 246 52 ACATATCCCCCATCAACTTTTGCTCCATCAGCATACCCAACTTCTTCATCATGGGGTTCAACACATCCACCAGAAGATCTTCCAACTGTT TCATATGGAACAGTTCAACCTCAAGTTTCACTTGCGCAAAGTTTAATCGGAAACTCAAACGGATTCGGTGGATTACCGGGACTTTTGCCT --- GO:0007264:small GTPase mediated signal transduction;GO:0015031:protein transport; GO:0005622:intracellular; --- >prot|F55A8.1.2|cod|F55A8.1.2|gene|F55A8.1|ann|egl-18 encodes a member of the GATA-family of transcription factors that affects cell migration, cell fate specification. expressed in the head, in hypodermal seam cells, VC neurons, and vulval precursor cells. [Source: WormBase] 1131 1 CAACAGCAGCAGCAGCAGCAACAACACCACCAG 33 CAG 5 45.4545454545455 448 480 39 CCAGACTTTTCGAATTTGATGAACGGATTCATGTTTGATCCTCTGAATATGTCAAATCCAAATGGAATGATGCAATTATTATCAATGGTT CACATTGAGAATCAACAATCCGTGAGCCCACCACAATCGAAATCCGTGAAAATTGAAGATCCAATGGATCAGGATGTGAAACAGGAAGAG GO:0004519:endonuclease activity; GO:0006281:DNA repair; GO:0005622:intracellular; --- >prot|F26H11.2b|cod|F26H11.2b|gene|F26H11.2|ann|Nucleosome-remodeling factor subunit NURF301-like. [Source:UniProtKB/Swiss-Prot;Acc:Q6BER5] 5082 2 CAAATGGTGCAGCAACAGCAACAA 24 CAA 2 25 4963 4986 97 TACGTGCTTCAAGGCGGAAACTCCGGTACACCAAATGTAAATCCTCCAAAAGTGTCGTCTCGTGGAGGGCCGCGTGGCGGATTGACTATG CATAACCCGTTCCAGGCTCACTATGACATGCCTGATGACGCGACTGGTTTCGCAGTTTCCACCACAACTGAGCAAGTGCCAGATGAGCAA GO:0005524:ATP binding; --- --- --- >prot|F41G3.3|cod|F41G3.3|gene|F41G3.3|ann|F41G3.3 [Source:RefSeq_peptide;Acc:NP_495382] 1734 1 CAACAACAACAACAGCAACAA 21 CAA 4 57.1428571428571 859 879 49 ATAAATAACCTCAAAAGTGGTGGAGCAGAAAAACAAGAAGATACAATTCCTCGTAACCGTGTCTCTACAAATCCATTCATGAGAGCAAAT AATCACAATGCAACTCGTTTTGAAAATAATAAAAATTCTTCGAAAAATGTAGCAGAAGTTGTGGAAAAAATGAATAATGGAGATTGGCCA --- --- --- --- >prot|F26G5.9|cod|F26G5.9|gene|F26G5.9|ann|tam-1 encodes a broadly expressed nuclear protein with RING finger, B-box, and glutamine/asparagine-rich domains that promotes signalling in the class B synthetic-multivulva gene pathway (which includes the lin-35/RB gene), and also promotes the activity of genes in multicopy transgenic arrays. the normal role of TAM-1's class B activity is presumably to inhibit RAS pathway activity in vulval development, while TAM-1's effect on transgenes may be through changes in the acetylation state of histones in chromatin. [Source: WormBase] 2835 3 CAGCAACAGCAGCAGCAA 18 CAG 3 50 1609 1626 56 ATAATGCATGGAAACATGCAAATCGCATTCCAACAGCATATGCACAACAATGCCAATGTTCCGATGCCACCGCAAATGCCAGCTCATCCA CGTCATCCCAACGAAGGGCAGCAATTCCAACAGGGACCACCGCCACCACCACCACAACGTATACAGAATCATCAACAGCAGATGCAGCAG GO:0016651:oxidoreductase activity, acting on NADH or NADPH; --- --- --- >prot|F26G5.9|cod|F26G5.9|gene|F26G5.9|ann|tam-1 encodes a broadly expressed nuclear protein with RING finger, B-box, and glutamine/asparagine-rich domains that promotes signalling in the class B synthetic-multivulva gene pathway (which includes the lin-35/RB gene), and also promotes the activity of genes in multicopy transgenic arrays. the normal role of TAM-1's class B activity is presumably to inhibit RAS pathway activity in vulval development, while TAM-1's effect on transgenes may be through changes in the acetylation state of histones in chromatin. [Source: WormBase] 2835 3 CAGCAGCTTCAAGTGCAGCAGCAACAACAGCCGCAA 36 CAG 2 16.6666666666667 1723 1758 60 CCCAACGAAGGGCAGCAATTCCAACAGGGACCACCGCCACCACCACCACAACGTATACAGAATCATCAACAGCAGATGCAGCAGTATCAT CCACGTGCGCAACCGTTCAGACCGCCAATCCAGCAGCAGCAGCAACTGCAACAAATTGATCTACAAGCGATGAACGATCGACAATTCCAA GO:0016651:oxidoreductase activity, acting on NADH or NADPH; --- --- --- >prot|F26G5.9|cod|F26G5.9|gene|F26G5.9|ann|tam-1 encodes a broadly expressed nuclear protein with RING finger, B-box, and glutamine/asparagine-rich domains that promotes signalling in the class B synthetic-multivulva gene pathway (which includes the lin-35/RB gene), and also promotes the activity of genes in multicopy transgenic arrays. the normal role of TAM-1's class B activity is presumably to inhibit RAS pathway activity in vulval development, while TAM-1's effect on transgenes may be through changes in the acetylation state of histones in chromatin. [Source: WormBase] 2835 3 CAGCAGCAGCAGCAACTGCAACAA 24 CAG 4 50 1789 1812 63 CAACAGCAGATGCAGCAGTATCATCAGCAGCTTCAAGTGCAGCAGCAACAACAGCCGCAACCACGTGCGCAACCGTTCAGACCGCCAATC ATTGATCTACAAGCGATGAACGATCGACAATTCCAACAGTTGGCTGATGAAATCGTGGCGGAGGATCAAATGGTACAAAATGCTGTCGAT GO:0016651:oxidoreductase activity, acting on NADH or NADPH; --- --- --- >prot|C14B9.6b|cod|C14B9.6b|gene|C14B9.6|ann|gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] 5601 5 CAACAACAGCATCTACAGCAACAACAGCAA 30 CAA 2 20 4084 4113 72 AATTTGGCTGTTGTTTATCAGAATAAGATGCCTCAAGATCGTGAGAAGCTTCTCCAAGAACAACAGTTGAATCAATACCTTTTTGCTGCT CATCATGGTACCCAACCAGAGCAAAAATCAAAGAGAAAATCAGGAATTGAAAGCATCACAAGTATGCAAGGTGCACCTCATCGTCATATT --- --- --- --- >prot|W06F12.1a|cod|W06F12.1a|gene|W06F12.1|ann|lit-1 encodes a serine threonine protein kinase homolog related to the Drosophila protein Nemo that is required for embryonic viability, plays a central role in controlling the asymmetry of cell divisions during embryogenesis, and affects EMS, MS, and C lineages. acts downstream of mom-2 with respect to polarity defects and mediates larval cell fate decisions that involve POP-1, and is expressed in most embryonic and larval cells. [Source: WormBase] 1905 1 CAACAGCAGCAGCAACAGCAG 21 CAG 3 42.8571428571429 487 507 25 CAACCACACTATTCAGCAGTTGTGCCACGATCTGACGTAATACAACAACCACCACACTTTGCTCTGCACCACCATCTTCAGAATTTGGTT GCTCACCATCATCATCAGCAATTAGTTGGTGAAATGGCCCTAGTTTCACATACACATCCGGCCGCCGTCGGCTCTACGACGTGCTACGAA --- GO:0006836:neurotransmitter transport; GO:0005887:integral to plasma membrane;GO:0016020:membrane; --- >prot|H20J18.1b.1|cod|H20J18.1b.1|gene|H20J18.1|ann|scd-1 encodes a novel protein with several regions that are extremely glutamine (Q) rich, interspersed with other residues (usually alanine). SCD-1 affects signalling by proteins in the DAF-7/transforming growth factor (TGF)-beta pathway (DAF-1, DAF-8, and DAF-14), and the Q-rich regions of SCD-1 protein may mediate epigenetic changes of stably heritable tertiary conformation. [Source: WormBase] 2730 3 CAACAACAACAACAA 15 CAA 5 100 1816 1830 66 CTGCAGCATGCTCTTCTTCAACATGCCAATAACTCTACGAATAGTGCCTCTAAAGCCACCCTTCATGACATTCGTTTTCAAGCTATGGCC GTAGCCGCATCTGGAGTCGGACAGGGACAAACGACACTTCATCCCTTCATTCGTCCAAACGATGAACCGATAATAAATGTGGAGGATGAC --- --- --- --- >prot|F13H8.5|cod|F13H8.5|gene|F13H8.5|ann|F13H8.5 encodes a protein with a domain of unknown function (DB. IPR002602) that is found in several worm proteins, and a glutamine/asparagine-rich domain. [Source: WormBase] 1320 1 CAACCACAGCAACAGCAGCAG 21 CAG 3 42.8571428571429 265 285 20 CAACAACAAAATTATCAGCAATTCCTAGCTCAACAACAGTACCAACCACAATTCCAAGCTCAGCAACAGCCTCAGCAACCACAATATTTC CCTGTACAGTACCAACAACAGCAACCACAGCAACCACTTCAATATCAGCAGCAACCACAACCAGCTCCACCACCAATCTACTCACAAACT --- --- --- --- >prot|F13H6.1a|cod|F13H6.1a|gene|F13H6.1|ann|F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620] 2073 1 CAACAACAACAGCAACAACAACAACAGCTGCAACAACAGCAACAA 45 CAA 4 26.6666666666667 1165 1209 56 ATGCAGGAATATTATGCATCAATTCAACAGATGCCATATCCAATGACAAATAGTACTGCGGTTGCTTTGTTGAATATTTCAAACAACCTT AATCTGATCGCCGCTCAACCTCAGGTCGCAACTCCACAACCACCCGCACCGACACCTTTGTTTCAGAGTTTGAACAGATTAAGTACCGCT GO:0003700:sequence-specific DNA binding transcription factor activity;GO:0008270:zinc ion binding;GO:0043565:sequence-specific DNA binding; GO:0006355:regulation of transcription, DNA-dependent; --- --- >prot|Y71F9AL.11|cod|Y71F9AL.11|gene|Y71F9AL.11|ann|Y71F9AL.11 [Source:RefSeq_peptide;Acc:NP_491058] 591 1 CAGCAGCAGCAGCAGCAG 18 CAG 6 100 397 414 67 GCACTATCTCCACCTCTTAATTTCTCTGCGCCCTCCGTGTCTCTCGTCGCCGGGCGCCGAATCAATGAACACCTCGGGAAGGCAGCCACA TCCCGTTTTGTGCATGACCCCCATCATCATCATTTGAAAAGAAAAAAAAGAACGAGAATTTTGCCCTGCGTCACCCAATTCCCCATTATA --- GO:0007186:G-protein coupled receptor protein signaling pathway; GO:0016021:integral to membrane; --- >prot|Y20F4.2|cod|Y20F4.2|gene|Y20F4.2|ann|Y20F4.2 [Source:RefSeq_peptide;Acc:NP_490917] 1422 1 CAAAATGTGCAACAGCAGCAGCAACAGCAACAG 33 CAG 3 27.2727272727273 973 1005 68 GATGGATCAGGGACACCCTCTCCGTATATGGAAGTAAGTCCTCCCGGAATGCATGATTTCAATCAAGATGCCGGAAGTTTACCCAATCTT GAAATTTATACAAACGGGGGAGCCCCTGGTGGTGGATACTATCATGCTCCAATTGGACCAAGACATAGTACAGGTGCATGTGGTCCGAGG --- --- --- --- >prot|Y54E10BR.3|cod|Y54E10BR.3|gene|Y54E10BR.3|ann|Y54E10BR.3 [Source:RefSeq_peptide;Acc:NP_491091] 915 1 CAGCAGCAGCAGCAGCAA 18 CAG 5 83.3333333333333 406 423 44 GGTAGAGAACAACAGCATACACTTGAAGAATTTATTAGAAACATGTTCAGACCAGATCCACGTGGAGCCGCCGAAGAAGCCGCCAGTGCT CCACATCCAAATGTGACATTCTCATTCCAAATGCCCGGTGGAATTGGTGTTCAGATTCATGCACATACTGCCGGAGGTGGTGGTGGTAAC GO:0005230:extracellular ligand-gated ion channel activity; GO:0006811:ion transport; GO:0016021:integral to membrane;GO:0045211:postsynaptic membrane; --- >prot|F43E2.1|cod|F43E2.1|gene|F43E2.1|ann|F43E2.1 [Source:RefSeq_peptide;Acc:NP_495546] 1404 1 CAACAACAACAACAA 15 CAA 5 100 1345 1359 96 GTGGCAATGCATCATCAGATTCAAATGATGCAAGGACAAATGATGCAGCAGCAAATCGTCTTCACAGCACCGGAGATGTATTACTACTCA CCACACCCGATCTTCGGGATTCAACAATCTTCCCAATTCTTC GO:0005515:protein binding; --- --- --- >prot|C45G7.4|cod|C45G7.4|gene|C45G7.4|ann|C45G7.4 [Source:RefSeq_peptide;Acc:NP_500203] 1812 1 CAACAACAACAACAACAACAA 21 CAA 7 100 403 423 22 GTCACAGTGATTGAAGTCCCCGAGCTGGTTCATAACCTCCCACCACCAATGGCCGAAGTTTCCTCCTCGGCCACCAAGATTGTGACGTCA CCCGCTGTTGCCACAAAAATGCCACGTCATCATGTGAGCAAGAAAATGAAGGCGTTGGCAAAACGTACCGAGGAGAGCAAGCACTTTCGA --- --- --- --- >prot|M117.4|cod|M117.4|gene|M117.4|ann|M117.4 [Source:RefSeq_peptide;Acc:NP_502238] 1989 1 CAACGAGAGCAAGCACAACAGCAGCAACAACAACAGCAA 39 CAA 3 23.0769230769231 1081 1119 54 AACAGAGGAGGGCAGGTGCAAAAGCAACCGTCGAAAGTTGTACTGCAGCCTGGTGCTCCTGGAGCAACACCCGTAGCATCGACGCCGAAT AAGGGGCCGATGGGATTGTTCAAGAAGATCTACAGAAAGATGAATTTTCGAGCAGCTTCGGATTGTACCGTTGAACCAACAAAAGAAATG --- --- --- --- >prot|F52G3.1.1|cod|F52G3.1.1|gene|F52G3.1|ann|F52G3.1 [Source:RefSeq_peptide;Acc:NP_510744] 3519 1 CAACAACAACAACAACAACAACAACAACAATCATCGGGACAG 42 CAA 10 71.4285714285714 3049 3090 86 GGTCAAGCGCCTTATTTCGACCGTACCACATTGCCACCGGCAAACTTGGCTGTTGGAAGTCAACGACAGTTTAGTGGCAACATGAATCGT TCGCACCCGATGAATGGGATGGGCAACTCAAATGGAGGACCACAATTCCCACAACAAAACTTCACGCAACCACCGCCACCAGTGATGAGG --- --- --- --- >prot|Y57G11C.9a|cod|Y57G11C.9a|gene|Y57G11C.9|ann|Y57G11C.9b [Source:RefSeq_peptide;Acc:NP_502785] 1662 1 CAGCAACAACAGCAACAACAGCAA 24 CAA 2 25 1204 1227 72 GAAGCAACTCCGAAGATGATTGTTAGAGAGACCCCACAACCTGCTCAACCGCCAGTTCAAGTCAATTCTTATTATACCACTACACCTATT CCAATACCACCACAACTCCCTACAGCACTCTTTGGTCATCTCAAAGCCTTCCAATCTGCTCTCCTCTCCACTGTCAAGTATGAGCCGCCA --- --- --- --- >prot|ZC376.7a.2|cod|ZC376.7a.2|gene|ZC376.7|ann|ZC376.7b [Source:RefSeq_peptide;Acc:NP_872160] 1467 1 CAGCAACAACAGCAGACATGTCAGCAG 27 CAA 2 22.2222222222222 454 480 31 GGAAAATCAACTGATTGTTTTGAGCTGGAAGCATGGCGACCGACCGACTCATGGCAGAATGGTAGCAGTGTTGGACATCCACATGGTCAT CCGCCCACGCATTCAAGTACAACAGAAACAATGCATGATTTCTCCAATTTTGGAGATAATATGGGCTCCCCGCTCTTCCAATCACCATCA GO:0008324:cation transmembrane transporter activity; --- GO:0016020:membrane; --- >prot|Y48C3A.12|cod|Y48C3A.12|gene|Y48C3A.12|ann|Y48C3A.12 [Source:RefSeq_peptide;Acc:NP_496820] 2028 1 CAGCAGCAGCAGCAG 15 CAG 5 100 1177 1191 58 TGCGGGATCCCAATCTCCGGAGGAGGAGCCGCCGCACAAACCTCTGCACCCCACTCAACACCCTACGGTACCCCAAAGGACACGCATATC CCAGTGGTATTTGAAGAGATTCTCACTGCAAATGGACCCCCACCGCAGCCGTCTTCTCCACTACTACCAGCTCTCATTACAACTACAACA --- --- --- --- >prot|W10D5.3c|cod|W10D5.3c|gene|W10D5.3|ann|gei-17 encodes a protein containing a MIZ domain (Msx-interacting-zinc finger) that affects embryonic viability, vulval development, and body morphology. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] 2382 1 CAGCAGCAACAACAACAACAACCACAG 27 CAA 5 55.5555555555556 391 417 16 CGACCTGCAACAACATCCCAAGTTCGGTCTCATCCATATGTGCTGCCATCTCGATCTGGAGCTAGTAATCACTTGGTCAATCATCATTAT CCTCACAATCTACTTCATCAACAAATGATGGCGTCACATCATTCACATCTGCAACAGCAGCACCATCCGTCGACGGTGAGATGGCTAACT GO:0008270:zinc ion binding;GO:0003676:nucleic acid binding; --- --- --- >prot|C37E2.4|cod|C37E2.4|gene|C37E2.4|ann|ceh-36 encodes a paired-like homeodomain transcription factor that is one of three orthodenticle (OTD)-like homeodomain proteins in C. elegans (the others being ttx-1 and ceh-37). CEH-36 is required broadly for specification of the AWC olfactory neuron and also for establishing the left-right asymmetry of the ASEL and ASER gustatory neurons. in addition, CEH-36 is sufficient to specify the AFD thermosensory neuron fate in some cell types. CEH-36 is expressed in the AWC and ASE chemosensory neurons. [Source: WormBase] 774 1 CAACTGCAACAGCAGCAACAGCAGCAATTGCAACAG 36 CAG 2 16.6666666666667 520 555 67 ACTAAATCACTAGGAATTCACATACCAGGCACACCGGAATTCAATGCACACAGTGCTGCCAAATATGAGGCAAACTCAGCAGTCTTGAGT CCAAAAAGTGAACTGGAGGACTCGAAACCACTTGCAGATACCAAATACGATTCCACTCAATCACTTCTTCCTCAGGCTCAAGCTGCAGCA --- --- --- --- >prot|Y53C12B.3b|cod|Y53C12B.3b|gene|Y53C12B.3|ann|nos-3 encodes a homolog of Drosophila NANOS that physically interacts with FBF-1 (similar, though not orthologous, to Drosophila PUMILIO). NOS-3 is required in development of the hermaphrodite germ-line to promote the switch from sperm to oocyte production, perhaps by forming a complex with FBF-1 that controls fem-3 mRNA. [Source: WormBase] 2616 2 CAGCAGTTCCAGCAACATTCACAGCAGCAACAACAA 36 CAA 3 25 10 45 0 GGTCGTGGAGGTTACTCACGTGGACATGGTGGAGGATCAGGAGGAGGACAACGTGGAAACTATCAGAATAAACGTAAGTAAATGTCTGGA CGTGCCCCAACCGTCTATAATAATAACAACAAGAAAAACGGCGGCAGCGCTGCAAACTCAAACCAAAACAACAACAACCCCCATCATACC --- --- --- --- >prot|Y53C12B.3b|cod|Y53C12B.3b|gene|Y53C12B.3|ann|nos-3 encodes a homolog of Drosophila NANOS that physically interacts with FBF-1 (similar, though not orthologous, to Drosophila PUMILIO). NOS-3 is required in development of the hermaphrodite germ-line to promote the switch from sperm to oocyte production, perhaps by forming a complex with FBF-1 that controls fem-3 mRNA. [Source: WormBase] 2616 2 CAGAATCAACAGCAGCAGCAACAA 24 CAG 3 37.5 913 936 35 CCACCGCCACACAATGCTCAATCTTATGGACAGTATAGGGGTCCACAAGGCCCGCAAGGCCAAATTATTCAAATGATGCCTCACAATCCA CATCCAATGCTGTATCCAATGGTGTATGTTCCTGTGCCAGCACCACGAGTGTTCCGGCAAGAGCCAGCTGGTGGAGCTAGCAGTTTGGAA --- --- --- --- >prot|D2045.1c|cod|D2045.1c|gene|D2045.1|ann|atx-2 is required for early embryonic patterning. it encodes an ortholog of human ataxin-2, which when mutated leads to spinocerebellar ataxia 2 (SCA2. OMIM:183090). [Source: WormBase] 2793 4 CAGCAACAACAACAG 15 CAA 3 60 751 765 26 GACGACGACGAGCGAGATTTGGACAAAATCACGCGTCAAGAGGATTTCGAGAATGGCAATGGCCGAAAGCGCAATAATAACAGCTTCAAC CGCCGCAATCCGAATATTGCACCAAACGGGCAGCCAGTGAATCGACGTGCCGAGGGTCTTCGCGGAGATCGTCGTAATAGTGGAAGCTCT --- GO:0006869:lipid transport; --- --- >prot|D2045.1c|cod|D2045.1c|gene|D2045.1|ann|atx-2 is required for early embryonic patterning. it encodes an ortholog of human ataxin-2, which when mutated leads to spinocerebellar ataxia 2 (SCA2. OMIM:183090). [Source: WormBase] 2793 4 CAGAATCAGCAGCAGCAGCAAGGTCAA 27 CAG 4 44.4444444444444 910 936 32 GGTCTTCGCGGAGATCGTCGTAATAGTGGAAGCTCTTCAGCGAACAATAGTCGCTACGGTGCTCCAGCAGCGGCTCAGCAGAACTATTCA AAAGGTTATCGCCGCCAGAACGAGGAAAATGACTGGCAGATGGCCAAGGGGAAGGGCCAGAACCAGGGCCACGACCACTCGTTCCGTCAA --- GO:0006869:lipid transport; --- --- >prot|D2045.1c|cod|D2045.1c|gene|D2045.1|ann|atx-2 is required for early embryonic patterning. it encodes an ortholog of human ataxin-2, which when mutated leads to spinocerebellar ataxia 2 (SCA2. OMIM:183090). [Source: WormBase] 2793 4 CAGCAACAACAACAACAGCAACAGCAACAAATGCACCGCCAG 42 CAA 4 28.5714285714286 2704 2745 96 CAACATCCTCAACAAAGTCTTATGGGCGAGCGATCTGATCAAGGATTCCCGACGTCGGGATACTTTGACTACCGTACAATGCCAAACTAT AATTCGCTTCCACAGCAGTTCCAAGGCAATCAAGCTTTGAAGGTG --- GO:0006869:lipid transport; --- --- >prot|F55G1.1|cod|F55G1.1|gene|F55G1.1|ann|F55G1.1 [Source:RefSeq_peptide;Acc:NP_501205] 990 1 CAGCAACAACAACAACATCAACAA 24 CAA 4 50 490 513 49 GTGAAGTTACGAAGAAATCTTACCGAAATTCGAAAAGATATCAGGAACTTTGAGACTACAACGGATTTTACAACCTCACAAGATTGGGCA CATCATGAATTTCAACCAAATTGTTCTATTCCTATGCAAAGGCATCCAATATCTCGATCAGCTTCATTTGTTGCACCAACTCCAATGATT --- --- --- --- >prot|C18H9.3|cod|C18H9.3|gene|C18H9.3|ann|C18H9.3 [Source:RefSeq_peptide;Acc:NP_495360] 2757 2 CAACGTACACAGCAACAACAGCAACAACAACAGCAGCAATCGACTCAGCAGCAAGCACAA 60 CAA 3 15 751 810 27 TCGAAAGTTGGAAGTACATCTCGAACCTCCACCAATGCGGCCCCTCAATCATCTGAACGTCCTGCTTGGGCTCGTTCTGAATCTTGGATT CCTCCAATTACTCTGTGGAATAATCGAGAAGTTGGTTCTGATTCAACTGTTTGGAAAGATCGGAATCACATGGTTGCTGCGGTTAGAAAG --- --- --- --- >prot|C18H9.3|cod|C18H9.3|gene|C18H9.3|ann|C18H9.3 [Source:RefSeq_peptide;Acc:NP_495360] 2757 2 CAACAACAACAGCAACAACAACAA 24 CAA 4 50 925 948 33 CGAGAAGTTGGTTCTGATTCAACTGTTTGGAAAGATCGGAATCACATGGTTGCTGCGGTTAGAAAGGCATCCACAGAAAATCATCCACCA CGTTCATCTGCTCCAGTTTCTGCTCCTTCTCGGCAAGAGAGTGAATCAACGGATGTTCCGAATCTTCCTATTCCTACATATCCTTCTGAT --- --- --- --- >prot|C03D6.4|cod|C03D6.4|gene|C03D6.4|ann|npp-14 is orthologous to the human gene NUCLEOPORIN, 214-KD (NUP214. OMIM:114350), which encodes part of the nucleopore complex mediating nucleocytoplasmic transport. NUP214, as a fusion gene with DEK (OMIM:125264), is found in a subset of acute myeloid leukemia. [Source: WormBase] 4173 1 CAACAACAACAGCAACAGCAA 21 CAA 3 42.8571428571429 3748 3768 89 ACTTCTGGTGGAAATAATCCGTTTGCACCGAAGACGTCAACTGGGACATCAGCCAGTAGCAGTTCATGGCTTTTTGGTGGTGGTGGTAAT AAACCGTCGTTTTCTTTCAACACTGCCGGATCGTCAGCTCAACAAGCATCTGCACCTGCAACAGGAACGTCGTCAGTTTTTGGAGGAGCT --- --- --- --- >prot|Y61A9LA.3a|cod|Y61A9LA.3a|gene|Y61A9LA.3|ann|Y61A9LA.3b [Source:RefSeq_peptide;Acc:NP_504240] 2232 1 CAACATCAGCAGCAGCAGCAGCAG 24 CAG 6 75 1798 1821 80 TCTCTACTAGATTCGGTTACGATGGGGATGAAGGTGGCGGCGGTGGCACAGATGTCTCAGGCTCAGAATCCGATTCAAGGAGGACTGTTT CCGATGATGAGTGGTGGTGGTGGATTCGTTTCCGGGGTTCAGGTGGTTCCAATGCAAGTTCCAATGCAATCCTACCAGATGCCACAAATG --- --- --- --- >prot|R74.5a|cod|R74.5a|gene|R74.5|ann|asd-1 encodes an ortholog of human RBM9 et al., and paralog of FOX-1 and SPN-4. ASD-1 isoforms have an RNA recognition motif and 1-2 glutamine/asparagine-rich domains. ASD-1 and FOX-1 both bind a site in egl-15 mRNA that is required to repress exon 5B splicing into mature mRNA. ASD-1 alone is partly required for exon 5A expression in muscle cells, while FOX-1 alone is dispensable for it. double asd-1.fox-1 mutants completely fail to express exon 5A in muscle cells, and have a synthetic egl-15 phenotype, while asd-1.spn-4 mutants do not. asd-1 is expressed pharyngeally. [Source: WormBase] 1215 2 CAACAACAACAGCAACAAATGCAG 24 CAA 3 37.5 766 789 63 CGTCATCAACAACTCATGATGCCACCAACTTCTGCAGCAGCCATCTCTCAACTGCAAGCTCTTCAATATCAACAGGCACTGCTCGCTGCT AATCCTCAATTCCTTTTAAGTCTTCAACAACAGCAACAGGCACAAGCACAGGCTCCACCGACATCGATGGCTCAGCTTATTCAACATCAA GO:0008270:zinc ion binding; --- GO:0005622:intracellular; --- >prot|R74.5a|cod|R74.5a|gene|R74.5|ann|asd-1 encodes an ortholog of human RBM9 et al., and paralog of FOX-1 and SPN-4. ASD-1 isoforms have an RNA recognition motif and 1-2 glutamine/asparagine-rich domains. ASD-1 and FOX-1 both bind a site in egl-15 mRNA that is required to repress exon 5B splicing into mature mRNA. ASD-1 alone is partly required for exon 5A expression in muscle cells, while FOX-1 alone is dispensable for it. double asd-1.fox-1 mutants completely fail to express exon 5A in muscle cells, and have a synthetic egl-15 phenotype, while asd-1.spn-4 mutants do not. asd-1 is expressed pharyngeally. [Source: WormBase] 1215 2 CAACAACAGCAACAGGCACAAGCACAG 27 CAA 2 22.2222222222222 814 840 67 CAACTGCAAGCTCTTCAATATCAACAGGCACTGCTCGCTGCTCAACAACAACAGCAACAAATGCAGAATCCTCAATTCCTTTTAAGTCTT GCTCCACCGACATCGATGGCTCAGCTTATTCAACATCAACAACAGTTTGCAATGGATCCGATGGCTCAGGCACAGGCACAAGCTGCTCAA GO:0008270:zinc ion binding; --- GO:0005622:intracellular; --- >prot|ZK973.9|cod|ZK973.9|gene|ZK973.9|ann|ZK973.9 [Source:RefSeq_peptide;Acc:NP_491358] 702 1 CAGCAGCAACAACAG 15 CAG 2 40 499 513 71 CAGCCGCCTCACGGATTTGCTCCTCCGCCAATGGGTGGTGGTGTACCACCCGAGATGATGAATCATCAAGCTTATCAAGCACAAATGCGG CCTAATGGACAAGCTCCGCCACCTGTGTATCCACCGTTTGGACAGCCAGCACCGCAGATGAGTGGACAGCGAATGCCTTATCCTTACCCG --- --- --- --- >prot|T04C4.1a|cod|T04C4.1a|gene|T04C4.1|ann|T04C4.1a [Source:RefSeq_peptide;Acc:NP_001023357] 2868 1 CAGCACCAGCAGCAGCAGCAG 21 CAG 5 71.4285714285714 1957 1977 68 GTTGACAACGACAAGATGTGGGAAGTACCCACGGAGCAGCCATTCTCTCCGTGTGACGTTTCGAACTCGCCGAGCACAAGTTGTGCTCAT CTCAAAAATGGCTACCAACATCCCGAGGAGACGTCGTCGGTGGCAATGATGAGACGACTGAGGAATAATAATCAAATGGATACTTCTTCC --- --- --- --- >prot|Y53F4B.5|cod|Y53F4B.5|gene|Y53F4B.5|ann|Y53F4B.5 [Source:RefSeq_peptide;Acc:NP_497090] 435 1 CAAGCCATCCAACAACAGCAGCAA 24 CAA 2 25 100 123 23 CAATACCCCGACGAGTCGTTTTTGTTCCAGCCGCGTGGCGGACCCCCTCCTGGAGGACCACAGGATGTTCCTTTACAGTCAATGCCACCT TCGCTGGCTTCAGAGATGATAGCCCGGGATAGGCTAGAACATATTGTCAAACATGTCAAGAAATATCCTTTCAATTGTCCGTATTGTCGC --- --- --- --- >prot|K04G2.8a|cod|K04G2.8a|gene|K04G2.8|ann|The apr-1 gene encodes an ortholog of human APC (OMIM:175100, mutated in familial adenomatous polyposis) that is required for germline fertility, the control of homeodomain expression (CEH-13 and LIN-39) during embryogenesis and vulval development, and for the migration and elongation of hypodermal cells during embryo morphogenesis. APR-1 is thought to reside in adherens junctions, while also stimulating two beta-catenins in Wnt signalling (HMP-2 in migrating epithelial cells, and BAR-1 in the vulval precursor cells). however, APR-1 also binds PRY-1/axin, and with PRY-1 inhibits RAS-independent Wnt induction of LIN-39. [Source: WormBase] 3561 3 CAATTGCAGCAACAACAACAA 21 CAA 4 57.1428571428571 1627 1647 45 AGACATTTTGCCGTTCAACGAAATGGATTTGTGATGGCACAGTCCTACAATCAACAAATGGATCAACATCAGCAACAACAAATGATCTAT ATTATGACGGAGGATCAAGCGCAAATGGAACATCATCAACAAATCATGTACCTTCAGCAGCAACAACAACAATTTCATCAAATTCAACAA --- --- --- --- >prot|K04G2.8a|cod|K04G2.8a|gene|K04G2.8|ann|The apr-1 gene encodes an ortholog of human APC (OMIM:175100, mutated in familial adenomatous polyposis) that is required for germline fertility, the control of homeodomain expression (CEH-13 and LIN-39) during embryogenesis and vulval development, and for the migration and elongation of hypodermal cells during embryo morphogenesis. APR-1 is thought to reside in adherens junctions, while also stimulating two beta-catenins in Wnt signalling (HMP-2 in migrating epithelial cells, and BAR-1 in the vulval precursor cells). however, APR-1 also binds PRY-1/axin, and with PRY-1 inhibits RAS-independent Wnt induction of LIN-39. [Source: WormBase] 3561 3 CAGCAGCAACAACAACAA 18 CAA 4 66.6666666666667 1702 1719 47 CAACAAATGATCTATCAATTGCAGCAACAACAACAAATTATGACGGAGGATCAAGCGCAAATGGAACATCATCAACAAATCATGTACCTT TTTCATCAAATTCAACAACAGCAACAAATGCAAAAAGCTCAGGAAGCTGATCCAGTTCCTCCTACGGATGACGATCTAGATATTCCCACA --- --- --- --- >prot|K04G2.8a|cod|K04G2.8a|gene|K04G2.8|ann|The apr-1 gene encodes an ortholog of human APC (OMIM:175100, mutated in familial adenomatous polyposis) that is required for germline fertility, the control of homeodomain expression (CEH-13 and LIN-39) during embryogenesis and vulval development, and for the migration and elongation of hypodermal cells during embryo morphogenesis. APR-1 is thought to reside in adherens junctions, while also stimulating two beta-catenins in Wnt signalling (HMP-2 in migrating epithelial cells, and BAR-1 in the vulval precursor cells). however, APR-1 also binds PRY-1/axin, and with PRY-1 inhibits RAS-independent Wnt induction of LIN-39. [Source: WormBase] 3561 3 CAGCAGCAACAACAACAATTTCATCAAATTCAACAACAGCAACAAATGCAA 51 CAA 4 23.5294117647059 1702 1752 47 CAACAAATGATCTATCAATTGCAGCAACAACAACAAATTATGACGGAGGATCAAGCGCAAATGGAACATCATCAACAAATCATGTACCTT AAAGCTCAGGAAGCTGATCCAGTTCCTCCTACGGATGACGATCTAGATATTCCCACATCTACCGTAATGGGAACACGAAGTAACAGTGAA --- --- --- --- >prot|F40F9.7b.1|cod|F40F9.7b.1|gene|F40F9.7|ann|F40F9.7b [Source:RefSeq_peptide;Acc:NP_001023907] 918 1 CAACAGCAGCAACAG 15 CAG 2 40 61 75 6 CCTCCAGCACTGCCTATTGGCCGTCCGTGAATGTCAACGTTGGCATCCACTTCATCAGCCGGTGCTTCATCATCAACAGGTAGCAGCAAC GCAGCTGCTGTGATCCGAAGACGTCGTTTCAGCACTGCAAAAATTCAGCCAACACGCATAAAGAAGGTTATGCAAAGTGATGAGGATATC --- --- --- --- >prot|C07G1.4b|cod|C07G1.4b|gene|C07G1.4|ann|wsp-1 encodes a homolog of human WASP that interacts with Arp2/3 and is required for hypodermal cell migration during morphogenesis (ventral enclosure). when mutated, human WASP leads to Wiskott-Aldrich syndrome (OMIM:301000). [Source: WormBase] 2346 1 CAACAAAAGCAACTACAACAGCAACATCATCAGCAGCAACAACAGCAG 48 CAA 2 12.5 541 588 23 GGAGGATCCACAGGTACATATGCAAGGCGTCAGAACTATGCAAGATGTTATGTTCCAATATCTGCTGATGCATTCTATTACTATCACAAT CTAGCATTCCGACCTCGTCATCGATCATCACATCATCATCAAGAACCTCGTCGACATAGAGCTCCGAGTCCTGATCCAGACTATTCACCC --- --- --- --- >prot|C11D9.1|cod|C11D9.1|gene|C11D9.1|ann|C11D9.1 [Source:RefSeq_peptide;Acc:NP_491367] 1710 1 CAACAGATTCAGCCACAACAACAACAACAA 30 CAA 5 50 133 162 7 GACATGAACACAATGGGATCATCAATGGCATCCACCAGTCAATACCATCAGATTCCGATTCAAATCCAGAATCAGAATCCGTTACCGTCT TACCATCCACCAGATCATGTGACAACTCATAATGGTACAACTACGTTTCATACTACGAATCCCACAAAACCAAGACTTTGTGAAGGATCG --- GO:0007264:small GTPase mediated signal transduction;GO:0015031:protein transport; GO:0005622:intracellular; --- >prot|C50F2.3|cod|C50F2.3|gene|C50F2.3|ann|C50F2.3 [Source:RefSeq_peptide;Acc:NP_491250] 2568 1 CAGCAACAGCAGCAA 15 CAG 2 40 2314 2328 90 GTCACACTGACATCTGTACAAATGCGTGTGGATGCTGAACGAAAGGCACAGGAGACTACGACTTCGTCGAATCCGATGGATTCATTGGAT CCTTCGGATGGAGCAGGATCAATTACTCAGGTCTCAATGAACAAAGGAAATATTTCATTTGTACGTGGAGCCGGTAAAACGGTACAACAG GO:0003682:chromatin binding;GO:0003676:nucleic acid binding;GO:0004386:helicase activity;GO:0005524:ATP binding;GO:0008026:ATP-dependent helicase activity; GO:0006333:chromatin assembly or disassembly; GO:0000785:chromatin;GO:0005634:nucleus; --- >prot|Y76B12C.6|cod|Y76B12C.6|gene|Y76B12C.6|ann|Y76B12C.6 [Source:RefSeq_peptide;Acc:NP_500155] 1623 1 CAGCAGCAGCAGCAG 15 CAG 5 100 1504 1518 92 GGAAGCCTTGGACTCCTCTCGGAGTTGGATCGGGCTCGAGATGTGCTCGACGCGGTGCCCCCGCTACCGCCTGGTGGGATTCATGGAGCT GCTGTTAGAAAACGACCGGATTCACACCAGCAACAACAATCGGAGGAGAATCGGAGGAAGAGAATGTCCACTGGAGCGAGGAGTGTATGT --- --- --- --- >prot|Y57G11C.9b|cod|Y57G11C.9b|gene|Y57G11C.9|ann|Y57G11C.9b [Source:RefSeq_peptide;Acc:NP_502785] 1878 1 CAGCAACAACAGCAACAACAGCAA 24 CAA 2 25 1204 1227 64 GAAGCAACTCCGAAGATGATTGTTAGAGAGACCCCACAACCTGCTCAACCGCCAGTTCAAGTCAATTCTTATTATACCACTACACCTATT CCAATACCACCACAACTCCCTACAGCTCCACCACAACCACCACCGACCACGCCCCAACCTGCGTTTGTGCCCCGTCAAATTGGCAGAATC --- --- --- --- >prot|F57B10.1.1|cod|F57B10.1.1|gene|F57B10.1|ann|F57B10.1 [Source:RefSeq_peptide;Acc:NP_491897] 2073 1 CAGAATCAGCAACAACAACAA 21 CAA 4 57.1428571428571 508 528 24 TATTCAAAAGACGATGACTATGAAATTTGCAGTAGCGGACCTCTTCTTGCCTACACAAATGCCAATTCGGTTGCCACGTCAGCAGTTCAT AGGAGACTGAACCAAGCAGGATTCCCACATCAGAACTCAAATGGTCTTGTCAGATTTAAATCCAGCCAACCGAGAGTCCTCAATCCCGCA GO:0005515:protein binding;GO:0003707:steroid hormone receptor activity;GO:0008270:zinc ion binding;GO:0043565:sequence-specific DNA binding; GO:0006355:regulation of transcription, DNA-dependent; GO:0005634:nucleus; --- >prot|F01D5.8|cod|F01D5.8|gene|F01D5.8|ann|F01D5.8 [Source:RefSeq_peptide;Acc:NP_496938] 918 1 CAGCAACAACAACAA 15 CAA 4 80 874 888 95 GGGAAGTATATCCATGTCTTCACTCGTATTGCAAACTTCCTTCGTAACGAGACCCTCGTGAGCTGCCGTAGCGCTGAAGTCGACTCGTCA TTGTCATCGAAGCGAACGGAAAATGAA --- GO:0006810:transport; GO:0016021:integral to membrane; --- >prot|W04B5.3c|cod|W04B5.3c|gene|W04B5.3|ann|W04B5.3b [Source:RefSeq_peptide;Acc:NP_741096] 1062 1 CAACAGCAACAGCAACAG 18 CAA 1 16.6666666666667 1030 1047 97 CCTCAGCCACTTCCCCAACAAATGTCACGTCAACAGGCTCCAATCTATCAAAATCAACAGCAAATGCCTCCGGGATACAATCCTTATCTC ATGGCAGTAATT --- GO:0007156:homophilic cell adhesion; GO:0016020:membrane; --- >prot|K09H11.4|cod|K09H11.4|gene|K09H11.4|ann|K09H11.4 [Source:RefSeq_peptide;Acc:NP_504504] 1893 1 CAGCAACAGCAACAACAA 18 CAA 3 50 1138 1155 60 GAAAGAAGATCACATGGTTCAGAAGAAAGACGTGGAGGATCAGAAGAGCAACCTCACAGAGAGGAAAGAGGGCCCCAAAAGCCAGAAGGA GCTCCATCGCCTCCCAAGCCCCAAATCCCTCCGTTCCCTGCTTTCCCCAAATTCCCGTCCTTCGGTGGGTTCCAACCATTCCAACCAGAC --- --- --- --- >prot|C49H3.5b|cod|C49H3.5b|gene|C49H3.5|ann|ntl-4 encodes two proteins by alternative splicing, one of which (NTL-4A) has an N-terminal RING finger and a RNA recognition motif ('RRM', 'RBD', or 'RNP'), and both of which have glutamine/asparagine-rich domains. [Source: WormBase] 1848 3 CAGCAACAACAGCAATCACAACAGCAGAGACAG 33 CAA 2 18.1818181818182 1237 1269 67 CAGTTACATGCACAGCAACAGCATCAACAACAACAGTTTGCAGCAGATATGAACAGGCAACAGGACTATATGTATAGTAGACTTATGTCA TTCGACTCGACGCCTGGATTTTCACATCCATTCGGAAGTATGCAGCAGCAACAACAGTCTTCACAGCAACAACAACATCAGTCTCAGTCG --- --- --- --- >prot|C49H3.5b|cod|C49H3.5b|gene|C49H3.5|ann|ntl-4 encodes two proteins by alternative splicing, one of which (NTL-4A) has an N-terminal RING finger and a RNA recognition motif ('RRM', 'RBD', or 'RNP'), and both of which have glutamine/asparagine-rich domains. [Source: WormBase] 1848 3 CAGCAGCAACAACAG 15 CAG 2 40 1312 1326 71 AGTAGACTTATGTCACAGCAACAACAGCAATCACAACAGCAGAGACAGTTCGACTCGACGCCTGGATTTTCACATCCATTCGGAAGTATG TCTTCACAGCAACAACAACATCAGTCTCAGTCGTCACAGTCGTCCAGTCTTCTACAAGACTTGTTCAATCGCCAACAGCAACAACATCAA --- --- --- --- >prot|C49H3.5b|cod|C49H3.5b|gene|C49H3.5|ann|ntl-4 encodes two proteins by alternative splicing, one of which (NTL-4A) has an N-terminal RING finger and a RNA recognition motif ('RRM', 'RBD', or 'RNP'), and both of which have glutamine/asparagine-rich domains. [Source: WormBase] 1848 3 CAACAATCACAACAACAACAGCAACAGCAACAG 33 CAA 3 27.2727272727273 1594 1626 86 GTACCATTTGGAATGGCACCACCTCCAGGACTCGGAGGTCCATCTACGAACAGATCTTCCACGACACAACAAGCACCTCCACACATGACA TCAAGTATGGGATTGTTCGGAATGGGAGGCCATCAAAGTATGATGCAGGATCATCAATCACAGCAGCCACAATCTGCACAAGATGCATTC --- --- --- --- >prot|K04G2.8b|cod|K04G2.8b|gene|K04G2.8|ann|The apr-1 gene encodes an ortholog of human APC (OMIM:175100, mutated in familial adenomatous polyposis) that is required for germline fertility, the control of homeodomain expression (CEH-13 and LIN-39) during embryogenesis and vulval development, and for the migration and elongation of hypodermal cells during embryo morphogenesis. APR-1 is thought to reside in adherens junctions, while also stimulating two beta-catenins in Wnt signalling (HMP-2 in migrating epithelial cells, and BAR-1 in the vulval precursor cells). however, APR-1 also binds PRY-1/axin, and with PRY-1 inhibits RAS-independent Wnt induction of LIN-39. [Source: WormBase] 3567 3 CAATTGCAGCAACAACAACAA 21 CAA 4 57.1428571428571 1627 1647 45 AGACATTTTGCCGTTCAACGAAATGGATTTGTGATGGCACAGTCCTACAATCAACAAATGGATCAACATCAGCAACAACAAATGATCTAT ATTATGTTTCAGACGGAGGATCAAGCGCAAATGGAACATCATCAACAAATCATGTACCTTCAGCAGCAACAACAACAATTTCATCAAATT --- --- --- --- >prot|K04G2.8b|cod|K04G2.8b|gene|K04G2.8|ann|The apr-1 gene encodes an ortholog of human APC (OMIM:175100, mutated in familial adenomatous polyposis) that is required for germline fertility, the control of homeodomain expression (CEH-13 and LIN-39) during embryogenesis and vulval development, and for the migration and elongation of hypodermal cells during embryo morphogenesis. APR-1 is thought to reside in adherens junctions, while also stimulating two beta-catenins in Wnt signalling (HMP-2 in migrating epithelial cells, and BAR-1 in the vulval precursor cells). however, APR-1 also binds PRY-1/axin, and with PRY-1 inhibits RAS-independent Wnt induction of LIN-39. [Source: WormBase] 3567 3 CAGCAGCAACAACAACAA 18 CAA 4 66.6666666666667 1708 1725 47 ATGATCTATCAATTGCAGCAACAACAACAAATTATGTTTCAGACGGAGGATCAAGCGCAAATGGAACATCATCAACAAATCATGTACCTT TTTCATCAAATTCAACAACAGCAACAAATGCAAAAAGCTCAGGAAGCTGATCCAGTTCCTCCTACGGATGACGATCTAGATATTCCCACA --- --- --- --- >prot|K04G2.8b|cod|K04G2.8b|gene|K04G2.8|ann|The apr-1 gene encodes an ortholog of human APC (OMIM:175100, mutated in familial adenomatous polyposis) that is required for germline fertility, the control of homeodomain expression (CEH-13 and LIN-39) during embryogenesis and vulval development, and for the migration and elongation of hypodermal cells during embryo morphogenesis. APR-1 is thought to reside in adherens junctions, while also stimulating two beta-catenins in Wnt signalling (HMP-2 in migrating epithelial cells, and BAR-1 in the vulval precursor cells). however, APR-1 also binds PRY-1/axin, and with PRY-1 inhibits RAS-independent Wnt induction of LIN-39. [Source: WormBase] 3567 3 CAGCAGCAACAACAACAATTTCATCAAATTCAACAACAGCAACAAATGCAA 51 CAA 4 23.5294117647059 1708 1758 47 ATGATCTATCAATTGCAGCAACAACAACAAATTATGTTTCAGACGGAGGATCAAGCGCAAATGGAACATCATCAACAAATCATGTACCTT AAAGCTCAGGAAGCTGATCCAGTTCCTCCTACGGATGACGATCTAGATATTCCCACATCTACCGTAATGGGAACACGAAGTAACAGTGAA --- --- --- --- >prot|C06G1.6|cod|C06G1.6|gene|C06G1.6|ann|Putative uncharacterized protein. [Source:UniProtKB/TrEMBL;Acc:B1Q237] 2379 1 CAACAGCAGCAGCAACAG 18 CAG 3 50 802 819 33 CGCGAATACCACAACTCTACCCCGCATCAATATCAGCACTCAAGTTCGCTTGGTGGTCCTCCTCTGCCACTTCCACGAGAGTCGTCATTG GCGCACCCGTTCGAAAATCGATCTGAGTTTCATCGTCATCCACCGCCGCCGCCGCCGCCATCTTCCTCTTCATCTCATCAATTTTACAAC --- --- --- --- >prot|R06F6.12|cod|R06F6.12|gene|R06F6.12|ann|Uncharacterized protein R06F6.12. [Source:UniProtKB/Swiss-Prot;Acc:Q6BEV5] 1254 1 CAGCAGCAGCAGCAG 15 CAG 5 100 169 183 13 GTATATCCTGCCGATGAAGATCATATTTTCCACGAGGATCAGGCCCCACTTCGAGTTGAAAGTGCTAAGCATGAAGAAGAAATTGTTGAG CCGGAAGATCTTGAACAAGGAGATATGATTGTGGAGGATGGTGATCAACAGTTTATGAATATGGTTCAAATCACGCAGGAAGACATGTAC --- --- --- --- >prot|C27B7.4|cod|C27B7.4|gene|C27B7.4|ann|RADiation sensitivity abnormal/yeast RAD-related family member (rad-26) [Source:RefSeq_peptide;Acc:NP_501545] 3825 1 CAACTTCAGCAGCAACAACAACAGCAACAACAACAGCTTCAG 42 CAA 3 21.4285714285714 1957 1998 51 TGGAATCATCCAGACATTCTGTACAGGCTTGTAGAACAGAAAAAGAGAGCTGAAGAGGATAAAAAGAGAGTGGAGCAAATGAAATTTGCA GGAATGATGATGATGGGAAATAACGGTATGATGCCGGGATTTGGAGCACAATTTCATCCACAACAAAATGGAATGATGATGCAGAATGGT --- --- --- --- >prot|F54B11.4|cod|F54B11.4|gene|F54B11.4|ann|Putative uncharacterized protein. [Source:UniProtKB/TrEMBL;Acc:Q20740] 630 1 CAACAGCAACAGCAACAACAACAGCAAAACCAG 33 CAA 3 27.2727272727273 217 249 34 GAGATCAGCTCTTTTCTTCCGTCTTATTCACCATTTCAACAGCAACTACAGTTCCAGCAACTTCAACAATCTAGAAATCTTCTCAGTTTG GCACTAATCTCATCTCCACACAACCCAACACTTCTTCCAGATGTGATTGCTATTCCAAAACGTGAGACCGGAAATTCTTTGAACTTTTTA --- --- --- --- >prot|Y71F9B.10a.2|cod|Y71F9B.10a.2|gene|Y71F9B.10|ann|The sop-3 gene encodes a novel protein that regulates Hox gene expression by modulating Wnt signaling. [Source: WormBase] 4428 2 CAAATGCAGCAACAGCAACAGCAACAATTCCAAATGCAA 39 CAA 2 15.3846153846154 2359 2397 53 AGCTCGAGTGAACAGCATAACCCGAATCCCCATCAAATGTCACAATATCAAATGCAACAATACCAGCAAAATCAACAATTCCGAATGCAT TCTCCAAAGAATCCACTTGTTCCAGCATATACTGATGAGGATTCCGATGAAGAATGTGATCCTCCACCACCACCAAAGCCACAGGTCAGT GO:0016303:1-phosphatidylinositol-3-kinase activity;GO:0016773:phosphotransferase activity, alcohol group as acceptor;GO:0004428:inositol or phosphatidylinositol kinase activity;GO:0046934:phosphatidylinositol-4,5-bisphosphate 3-kinase activity; GO:0007568:aging;GO:0040024:dauer larval development;GO:0046854:phosphoinositide phosphorylation;GO:0048015:phosphoinositide-mediated signaling;GO:0007165:signal transduction; --- --- >prot|Y71F9B.10a.2|cod|Y71F9B.10a.2|gene|Y71F9B.10|ann|The sop-3 gene encodes a novel protein that regulates Hox gene expression by modulating Wnt signaling. [Source: WormBase] 4428 2 CAACAACAACAACAA 15 CAA 5 100 3745 3759 84 TCATCATCCACAGAATCTAAGAAAGAGCCCCCGTCAGCAGCTCCGATCACGAGAAAAGAGTCTACGACTGCACCAGTTGCTCCGGCGGTT CGAAAAGAGTCGTTTACGGCTCTTCCGTCATTGCCAGAGCAGCAGCAGCATCATCGAGAGCCGCTTTTGAAGAAGAAGCCACCACTACAA GO:0016303:1-phosphatidylinositol-3-kinase activity;GO:0016773:phosphotransferase activity, alcohol group as acceptor;GO:0004428:inositol or phosphatidylinositol kinase activity;GO:0046934:phosphatidylinositol-4,5-bisphosphate 3-kinase activity; GO:0007568:aging;GO:0040024:dauer larval development;GO:0046854:phosphoinositide phosphorylation;GO:0048015:phosphoinositide-mediated signaling;GO:0007165:signal transduction; --- --- >prot|F33H1.4|cod|F33H1.4|gene|F33H1.4|ann|F33H1.4 [Source:RefSeq_peptide;Acc:NP_496194] 4137 1 CAACAGATTCGACAACATCAGCAGCAGCAACAGCAA 36 CAG 3 25 2017 2052 48 ACAGGAGCACTTGTGGAGCCGCATAATATGGTGGAGCAGGAACAGCAAGTGATGCAGGAAGAGGTGGAACAAGAAGATGTTAAGAATAAA GAAGTACCAGGCGGCCAAGAAGGAGCCGGCCCTGTGGATCGTGGAAATTTGGAATTCAGCTTTCTGGACACGAATAATATTTGCTGTGGC --- --- --- ---